Eulor2A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000125 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 306 |
| Kimura value | 27.05 |
| Tau index | 0.0000 |
| Description | Eulor2A (Euteleostomi-conserved low frequency repeat 2A) |
| Comment | Putative DNA transposon (assignment unclear). Present in chicken (~200 copies) and mammals (~150 copies). Split into two subfamilies (Eulor2A and 2B), differing mainly by a 31bp indel. Like Eulor1, Eulor2 subfamilies also have a characteristic hairpin-tail structure. Hairpin (roughly) pos 8-188. |
| Sequence |
TAATTAAGAGATAATGTCAATGGAATAGAACGTTGTCACGGGATAATGGTCTCCCGCTGCTAGATAAATGCCGAGGCGAAGCCGAGGCATTTATCGAAAATAAACGTCGAGGCGAAGCCGAGACGTTTATTTTCAAAGCGGGAGACATTGATCCTGTGACAACGTTCTATTACAATGACTTTATTTCTGTTATACCAAATGATTGATGTAGATTTAATCACTTTGTCTGATGGATGTTGGTGCAGCGGAATGACAGTCGCTCGCCGTACCGTTNTTAANCNGCTGCGTTCTGATCGGCTTAGGGGA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor2A | Dux | 210 | 220 | - | 13.37 | TGATTAAATCT |
| Eulor2A | ATHB-X | 197 | 205 | - | 13.36 | CAATCATTT |
| Eulor2A | HAT2 | 198 | 205 | - | 13.17 | CAATCATT |
| Eulor2A | JUB1 | 261 | 267 | - | 13.11 | ACGGCGA |
| Eulor2A | RPH1 | 299 | 305 | - | 13.07 | CCCCTAA |
| Eulor2A | FOXD3 | 124 | 137 | - | 12.89 | TTTGAAAATAAACG |
| Eulor2A | ATHB-12 | 198 | 205 | + | 12.80 | AATGATTG |
| Eulor2A | MYB83 | 235 | 242 | - | 12.74 | CACCAACA |
| Eulor2A | ATHB-7 | 196 | 206 | + | 12.64 | CAAATGATTGA |
| Eulor2A | ARF10 | 48 | 58 | - | 12.51 | AGCGGGAGACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
