Eulor12
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000124 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 184 |
| Kimura value | 26.22 |
| Tau index | 0.0000 |
| Description | Eulor12 (Euteleostomi-conserved low frequency repeat 12) |
| Comment | Putative DNA transposon (assignment unclear). Identified in both mammals and birds. Reconstructed from chicken DNA. ~100 copies/genome. Palindromic. Appears to be broken up in some subgroups. |
| Sequence |
CATTGNATAAAAAATAANAAATAGCCAACTGTGAATNACGAGGCTGTAATTCCATCTCGGGGTTCCGGTGACGTTAATAAACCGCTCGAGCTTCGCTCTCGTGGTTTACGACGTCACCAGAACCCCTCGATGGAATTACAGCCTTGTAATTCGCAGTTGGCTATNCGTTATTCTGTATGCAATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor12 | HOXC12 | 104 | 113 | - | 11.85 | CGTCGTAAAC |
| Eulor12 | HOXC10 | 104 | 112 | - | 11.82 | GTCGTAAAC |
| Eulor12 | JUNB | 108 | 118 | + | 11.74 | ACGACGTCACC |
| Eulor12 | AT1G76870 | 78 | 85 | + | 11.73 | TAAACCGC |
| Eulor12 | CREB3 | 107 | 118 | + | 11.70 | TACGACGTCACC |
| Eulor12 | BZIP30 | 24 | 32 | + | 11.69 | GCCAACTGT |
| Eulor12 | ZmbZIP54 | 109 | 116 | - | 11.66 | TGACGTCG |
| Eulor12 | ZmbZIP54 | 109 | 116 | + | 11.65 | CGACGTCA |
| Eulor12 | HOXC11 | 104 | 114 | - | 11.65 | ACGTCGTAAAC |
| Eulor12 | FOSL2::JUND | 108 | 117 | + | 11.50 | ACGACGTCAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
