Eulor10
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000122 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 317 |
| Kimura value | 25.37 |
| Tau index | 0.0000 |
| Description | Eulor10 (Euteleostomi-conserved low frequency repeat 10) |
| Comment | Putative DNA transposon (assignment unclear). Termini unclear. Eulor10 is present in mammals and birds (~40 copies), and alligator (~100 copies). Follows characteristic hairpin-tail structure, with at least two internal palindromes. |
| Sequence |
TGAAACGCGGGNCGGATTCATCAAAGGAGAGCTGGNANTTACCGACTCCGNATATTTTGCTTNAATTTTTTTTNTCTGATTCATGAANCGCTTTTCGAAATTCGAAAAGCGGTTCATGAATCGNTCGGGAGCCGGCAAAAATTAATAGTAATGAGCTCATTTCCATAGAAATGGGCTCATTACCATGCCGGCTGCCGAAAATTTACGAGGCCGGNTTCTTGCCGGCAAACGGGGTCCTGCAGGCAGTGTCCTTCCGCCTGCCTGCAGGAAATAATCCCNTNTTNAAAAATTAANCAAAAACAAATTTTAGTTTATTT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor10 | ARF7 | 218 | 226 | - | 12.11 | GCCGGCAAG |
| Eulor10 | DREB1G | 220 | 227 | + | 12.08 | TGCCGGCA |
| Eulor10 | DREB1G | 220 | 227 | - | 12.08 | TGCCGGCA |
| Eulor10 | TCF7L2 | 18 | 26 | + | 12.07 | TCATCAAAG |
| Eulor10 | cebp-1 | 92 | 102 | + | 12.05 | TTTTCGAAATT |
| Eulor10 | ZNF354A | 162 | 181 | + | 12.02 | TCCATAGAAATGGGCTCATT |
| Eulor10 | POU2F1 | 159 | 167 | - | 11.97 | TATGGAAAT |
| Eulor10 | SPL15B | 308 | 314 | - | 11.84 | TAAACTA |
| Eulor10 | FOS | 77 | 84 | + | 11.72 | TGATTCAT |
| Eulor10 | RAP2-11 | 187 | 197 | - | 11.70 | CGGCAGCCGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
