Eulor10
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000122 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 317 |
| Kimura value | 25.37 |
| Tau index | 0.0000 |
| Description | Eulor10 (Euteleostomi-conserved low frequency repeat 10) |
| Comment | Putative DNA transposon (assignment unclear). Termini unclear. Eulor10 is present in mammals and birds (~40 copies), and alligator (~100 copies). Follows characteristic hairpin-tail structure, with at least two internal palindromes. |
| Sequence |
TGAAACGCGGGNCGGATTCATCAAAGGAGAGCTGGNANTTACCGACTCCGNATATTTTGCTTNAATTTTTTTTNTCTGATTCATGAANCGCTTTTCGAAATTCGAAAAGCGGTTCATGAATCGNTCGGGAGCCGGCAAAAATTAATAGTAATGAGCTCATTTCCATAGAAATGGGCTCATTACCATGCCGGCTGCCGAAAATTTACGAGGCCGGNTTCTTGCCGGCAAACGGGGTCCTGCAGGCAGTGTCCTTCCGCCTGCCTGCAGGAAATAATCCCNTNTTNAAAAATTAANCAAAAACAAATTTTAGTTTATTT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor10 | TCX2 | 93 | 107 | + | 17.64 | TTTCGAAATTCGAAA |
| Eulor10 | SOL1 | 93 | 107 | + | 14.97 | TTTCGAAATTCGAAA |
| Eulor10 | TSO1 | 92 | 106 | + | 14.86 | TTTTCGAAATTCGAA |
| Eulor10 | TCX2 | 93 | 107 | - | 14.79 | TTTCGAATTTCGAAA |
| Eulor10 | POU6F2 | 149 | 157 | - | 14.58 | AGCTCATTA |
| Eulor10 | Lef1 | 20 | 27 | - | 14.17 | CCTTTGAT |
| Eulor10 | HOXC13 | 201 | 209 | - | 13.74 | CTCGTAAAT |
| Eulor10 | ERF6 | 131 | 137 | - | 13.72 | TGCCGGC |
| Eulor10 | ERF6 | 186 | 192 | + | 13.72 | TGCCGGC |
| Eulor10 | ERF6 | 220 | 226 | + | 13.72 | TGCCGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
