Eulor10
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000122 |
|---|---|
| TE superfamily | Transposase |
| TE class | DNA |
| Species | Amniota |
| Length | 317 |
| Kimura value | 25.37 |
| Tau index | 0.0000 |
| Description | Eulor10 (Euteleostomi-conserved low frequency repeat 10) |
| Comment | Putative DNA transposon (assignment unclear). Termini unclear. Eulor10 is present in mammals and birds (~40 copies), and alligator (~100 copies). Follows characteristic hairpin-tail structure, with at least two internal palindromes. |
| Sequence |
TGAAACGCGGGNCGGATTCATCAAAGGAGAGCTGGNANTTACCGACTCCGNATATTTTGCTTNAATTTTTTTTNTCTGATTCATGAANCGCTTTTCGAAATTCGAAAAGCGGTTCATGAATCGNTCGGGAGCCGGCAAAAATTAATAGTAATGAGCTCATTTCCATAGAAATGGGCTCATTACCATGCCGGCTGCCGAAAATTTACGAGGCCGGNTTCTTGCCGGCAAACGGGGTCCTGCAGGCAGTGTCCTTCCGCCTGCCTGCAGGAAATAATCCCNTNTTNAAAAATTAANCAAAAACAAATTTTAGTTTATTT
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Eulor10 | JUND | 151 | 161 | - | 12.68 | AATGAGCTCAT |
| Eulor10 | SOL1 | 93 | 107 | - | 12.60 | TTTCGAATTTCGAAA |
| Eulor10 | POU6F1 | 149 | 155 | + | 12.50 | TAATGAG |
| Eulor10 | POU6F1 | 176 | 182 | - | 12.50 | TAATGAG |
| Eulor10 | TCF7 | 20 | 26 | - | 12.42 | CTTTGAT |
| Eulor10 | OTX2 | 272 | 278 | - | 12.40 | GGGATTA |
| Eulor10 | EREB138 | 185 | 194 | - | 12.32 | CAGCCGGCAT |
| Eulor10 | EREB71 | 40 | 49 | + | 12.22 | TACCGACTCC |
| Eulor10 | Stat6 | 161 | 170 | + | 12.19 | TTCCATAGAA |
| Eulor10 | fkh-9 | 296 | 303 | + | 12.13 | AAAAACAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
