EUTREP8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001234
TE superfamily	Long_Terminal_Repeat_Element
TE order	LTR
Species	Eutheria
Length	593
Kimura value	33.39
Tau index	0.0000
Description	Conserved repetitive element present in placental mammals.
Comment	Termini with short TIRs and AATAAA signal at appropriate place (439-444) suggests this is an LTR. Present in Eutheria; absent in marsupials.
Sequence	TGTTGGGGTCTTAGGGATTGATTCTTATAGGTTTAATATAGCTATAGTTAATGGCTTATAGATTGTTGTATAGTCAGGCCCTGCTAGAAGTGTCTATTAAGGCTGGCAGTGGGAACCAGGAGGTCAAAGGGCCTGGGACAGATGCATGGCCTTCCTCCGAGCCAGGCTGGGAAAACACTCCCTGACAAGATACCATAGTTCTTGTGTACTCCTGAAACCTTGAGAGATAAAGAGGGAGCCTTCAGGCGGGCGCCATAAGAGATACGAAGGAATTTTGCAGCTGTGGGCCTCTGAGAATAAGAACGTATTGTTTCACAGTGTGCTGATGATGTCATCTGGGGTATAAAACACTGAGAGCTGCCCCGGTGCGGGGCTGTTCTCTGACCGGTGTGTCCGAAGCAGACCCGGTCACAGTGCANGTCAAGCAGAGGTGGCGGCCAATAAAGTCGTGCTTGCTTCAGTCTGTTCCATCTCCGGACCATTCGTCTGCCCTCCTCCCTTTCTTCCCCTTCCCGGGTTTGGATCTCTAGGTCTGGGGCCTGAAACCCCAGAGGGCGCGGATCCGGTCTTCCTTCCCCTCCCNCGCCCCAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
EUTREP8	FOSL2::JUND	326	335	-	13.91	ATGACATCAT
EUTREP8	sex-1	120	127	+	13.83	GAGGTCAA
EUTREP8	ZNF263	493	499	-	13.83	GGGAGGA
EUTREP8	RPN4	430	436	+	13.80	GGTGGCG
EUTREP8	TGA10	325	334	+	13.80	GATGATGTCA
EUTREP8	FOSB::JUN	325	335	+	13.69	GATGATGTCAT
EUTREP8	Hand1	529	537	-	13.64	CCCAGACCT
EUTREP8	Fer2	330	339	-	13.54	CCAGATGACA
EUTREP8	FOS	325	337	+	13.53	GATGATGTCATCT
EUTREP8	PDR8	470	476	-	13.52	CGGAGAT

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).