EUTREP8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001234
TE superfamily	Long_Terminal_Repeat_Element
TE class	LTR
Species	Eutheria
Length	593
Kimura value	33.39
Tau index	0.0000
Description	Conserved repetitive element present in placental mammals.
Comment	Termini with short TIRs and AATAAA signal at appropriate place (439-444) suggests this is an LTR. Present in Eutheria; absent in marsupials.
Sequence	TGTTGGGGTCTTAGGGATTGATTCTTATAGGTTTAATATAGCTATAGTTAATGGCTTATAGATTGTTGTATAGTCAGGCCCTGCTAGAAGTGTCTATTAAGGCTGGCAGTGGGAACCAGGAGGTCAAAGGGCCTGGGACAGATGCATGGCCTTCCTCCGAGCCAGGCTGGGAAAACACTCCCTGACAAGATACCATAGTTCTTGTGTACTCCTGAAACCTTGAGAGATAAAGAGGGAGCCTTCAGGCGGGCGCCATAAGAGATACGAAGGAATTTTGCAGCTGTGGGCCTCTGAGAATAAGAACGTATTGTTTCACAGTGTGCTGATGATGTCATCTGGGGTATAAAACACTGAGAGCTGCCCCGGTGCGGGGCTGTTCTCTGACCGGTGTGTCCGAAGCAGACCCGGTCACAGTGCANGTCAAGCAGAGGTGGCGGCCAATAAAGTCGTGCTTGCTTCAGTCTGTTCCATCTCCGGACCATTCGTCTGCCCTCCTCCCTTTCTTCCCCTTCCCGGGTTTGGATCTCTAGGTCTGGGGCCTGAAACCCCAGAGGGCGCGGATCCGGTCTTCCTTCCCCTCCCNCGCCCCAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
EUTREP8	EWSR1-FLI1	490	507	-	19.08	GGAAGAAAGGGAGGAGGG
EUTREP8	JUND	325	335	+	17.64	GATGATGTCAT
EUTREP8	ZmbZIP57	326	335	+	17.44	ATGATGTCAT
EUTREP8	ZmbZIP25	327	336	-	17.39	GATGACATCA
EUTREP8	ZmbZIP72	327	336	-	17.37	GATGACATCA
EUTREP8	ZNF135	116	129	-	17.13	CTTTGACCTCCTGG
EUTREP8	JUN	326	335	+	17.08	ATGATGTCAT
EUTREP8	FOS	324	336	-	16.91	GATGACATCATCA
EUTREP8	TGA6	326	335	+	16.80	ATGATGTCAT
EUTREP8	ATF2	326	335	+	16.33	ATGATGTCAT

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).