EUTREP8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001234
TE superfamily	Long_Terminal_Repeat_Element
TE class	LTR
Species	Eutheria
Length	593
Kimura value	33.39
Tau index	0.0000
Description	Conserved repetitive element present in placental mammals.
Comment	Termini with short TIRs and AATAAA signal at appropriate place (439-444) suggests this is an LTR. Present in Eutheria; absent in marsupials.
Sequence	TGTTGGGGTCTTAGGGATTGATTCTTATAGGTTTAATATAGCTATAGTTAATGGCTTATAGATTGTTGTATAGTCAGGCCCTGCTAGAAGTGTCTATTAAGGCTGGCAGTGGGAACCAGGAGGTCAAAGGGCCTGGGACAGATGCATGGCCTTCCTCCGAGCCAGGCTGGGAAAACACTCCCTGACAAGATACCATAGTTCTTGTGTACTCCTGAAACCTTGAGAGATAAAGAGGGAGCCTTCAGGCGGGCGCCATAAGAGATACGAAGGAATTTTGCAGCTGTGGGCCTCTGAGAATAAGAACGTATTGTTTCACAGTGTGCTGATGATGTCATCTGGGGTATAAAACACTGAGAGCTGCCCCGGTGCGGGGCTGTTCTCTGACCGGTGTGTCCGAAGCAGACCCGGTCACAGTGCANGTCAAGCAGAGGTGGCGGCCAATAAAGTCGTGCTTGCTTCAGTCTGTTCCATCTCCGGACCATTCGTCTGCCCTCCTCCCTTTCTTCCCCTTCCCGGGTTTGGATCTCTAGGTCTGGGGCCTGAAACCCCAGAGGGCGCGGATCCGGTCTTCCTTCCCCTCCCNCGCCCCAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
EUTREP8	FOSB::JUN	326	336	-	14.50	GATGACATCAT
EUTREP8	CREB1	327	334	+	14.43	TGATGTCA
EUTREP8	NHLH1	277	285	-	14.41	CACAGCTGC
EUTREP8	TGA3	325	335	-	14.35	ATGACATCATC
EUTREP8	TBS1	558	565	+	14.33	CGGATCCG
EUTREP8	TBS1	558	565	-	14.33	CGGATCCG
EUTREP8	Pparg::Rxra	121	133	+	14.03	AGGTCAAAGGGCC
EUTREP8	Hoxa13	438	445	+	14.02	CCAATAAA
EUTREP8	TGA3	326	336	+	14.02	ATGATGTCATC
EUTREP8	NR2F1	119	130	+	13.98	GGAGGTCAAAGG

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).