EUTREP8

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001234
TE superfamily	Long_Terminal_Repeat_Element
TE class	LTR
Species	Eutheria
Length	593
Kimura value	33.39
Tau index	0.0000
Description	Conserved repetitive element present in placental mammals.
Comment	Termini with short TIRs and AATAAA signal at appropriate place (439-444) suggests this is an LTR. Present in Eutheria; absent in marsupials.
Sequence	TGTTGGGGTCTTAGGGATTGATTCTTATAGGTTTAATATAGCTATAGTTAATGGCTTATAGATTGTTGTATAGTCAGGCCCTGCTAGAAGTGTCTATTAAGGCTGGCAGTGGGAACCAGGAGGTCAAAGGGCCTGGGACAGATGCATGGCCTTCCTCCGAGCCAGGCTGGGAAAACACTCCCTGACAAGATACCATAGTTCTTGTGTACTCCTGAAACCTTGAGAGATAAAGAGGGAGCCTTCAGGCGGGCGCCATAAGAGATACGAAGGAATTTTGCAGCTGTGGGCCTCTGAGAATAAGAACGTATTGTTTCACAGTGTGCTGATGATGTCATCTGGGGTATAAAACACTGAGAGCTGCCCCGGTGCGGGGCTGTTCTCTGACCGGTGTGTCCGAAGCAGACCCGGTCACAGTGCANGTCAAGCAGAGGTGGCGGCCAATAAAGTCGTGCTTGCTTCAGTCTGTTCCATCTCCGGACCATTCGTCTGCCCTCCTCCCTTTCTTCCCCTTCCCGGGTTTGGATCTCTAGGTCTGGGGCCTGAAACCCCAGAGGGCGCGGATCCGGTCTTCCTTCCCCTCCCNCGCCCCAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
EUTREP8	MAZ	575	582	+	16.08	CCCCTCCC
EUTREP8	Zfp961	248	255	+	15.99	GGGCGCCA
EUTREP8	Zfp809	165	173	-	15.73	TTCCCAGCC
EUTREP8	TGA4	324	334	-	15.29	TGACATCATCA
EUTREP8	TGA9	325	335	+	15.17	GATGATGTCAT
EUTREP8	FEZF2	164	171	-	15.03	CCCAGCCT
EUTREP8	JUND	326	336	-	14.72	GATGACATCAT
EUTREP8	CTCF	549	558	+	14.66	CAGAGGGCGC
EUTREP8	ZNF417	249	255	+	14.55	GGCGCCA
EUTREP8	ZNF341	372	379	-	14.55	GAACAGCC

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Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).