EUTREP7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001220 |
|---|---|
| TE superfamily | ERV1 |
| TE order | LTR |
| Species | Eutheria |
| Length | 392 |
| Kimura value | 27.84 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | 4 bp TSDs. Orientation confirmed with appropriately placed AATAAA signal. ERV1 designation is uncertain, as other LTR elements with 4 bp TSDs have been identified. |
| Sequence |
TGTAAAAGAAAAATTGTCCCAAACCTGGTCTGGGACAGAACCTTTTTGCGTGATGTAATTCACAACCTCCTTCTGGGAAGAAATTAGCATTCCTGATAAAATGCTTAAGCAATTTTCTGATAAACTTTAATGGGATTAAGACTTGTTCTGGGAAACCAGTCACCCACCCAGCCGACTGTCAGTCAAGAGTCTAGTGACCTTTAACCAGACATTCTTTTCTTTTTGTATCTAGTCTAACAATGATTATCTAACCATTCTCTTTTCCTATAAAATGTCCCTACCAAGAGNGAATCTTTGAATTGGCCTNCTAGAGGCCTTTTCCCTTGCAGCAAGNTTGNAATAAAACTTTGACACGTGCTCATAACTAAATTGTCTGAAAAGTTTCTTTAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP7 | NR1H2::RXRA | 193 | 209 | - | -1.09 | TCTGGTTAAAGGTCACT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
