EUTREP7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001220 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Eutheria |
| Length | 392 |
| Kimura value | 27.84 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | 4 bp TSDs. Orientation confirmed with appropriately placed AATAAA signal. ERV1 designation is uncertain, as other LTR elements with 4 bp TSDs have been identified. |
| Sequence |
TGTAAAAGAAAAATTGTCCCAAACCTGGTCTGGGACAGAACCTTTTTGCGTGATGTAATTCACAACCTCCTTCTGGGAAGAAATTAGCATTCCTGATAAAATGCTTAAGCAATTTTCTGATAAACTTTAATGGGATTAAGACTTGTTCTGGGAAACCAGTCACCCACCCAGCCGACTGTCAGTCAAGAGTCTAGTGACCTTTAACCAGACATTCTTTTCTTTTTGTATCTAGTCTAACAATGATTATCTAACCATTCTCTTTTCCTATAAAATGTCCCTACCAAGAGNGAATCTTTGAATTGGCCTNCTAGAGGCCTTTTCCCTTGCAGCAAGNTTGNAATAAAACTTTGACACGTGCTCATAACTAAATTGTCTGAAAAGTTTCTTTAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP7 | SIZF2 | 175 | 183 | + | 14.50 | ACTGTCAGT |
| EUTREP7 | E(spl)mdelta-HLH | 349 | 357 | - | 14.48 | CACGTGTCA |
| EUTREP7 | AZF1 | 216 | 224 | - | 14.41 | AAAAAGAAA |
| EUTREP7 | ABI5 | 350 | 357 | + | 14.41 | GACACGTG |
| EUTREP7 | DOF3.6 | 215 | 235 | + | 14.39 | TTTTCTTTTTGTATCTAGTCT |
| EUTREP7 | Stat4 | 71 | 80 | + | 14.38 | TTCTGGGAAG |
| EUTREP7 | Hr38 | 195 | 202 | - | 14.35 | AAAGGTCA |
| EUTREP7 | NR2F1 | 191 | 202 | - | 14.31 | AAAGGTCACTAG |
| EUTREP7 | BAM8 | 350 | 358 | + | 14.27 | GACACGTGC |
| EUTREP7 | ATHB-4 | 238 | 246 | - | 14.23 | TAATCATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
