EUTREP7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001220 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Eutheria |
| Length | 392 |
| Kimura value | 27.84 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | 4 bp TSDs. Orientation confirmed with appropriately placed AATAAA signal. ERV1 designation is uncertain, as other LTR elements with 4 bp TSDs have been identified. |
| Sequence |
TGTAAAAGAAAAATTGTCCCAAACCTGGTCTGGGACAGAACCTTTTTGCGTGATGTAATTCACAACCTCCTTCTGGGAAGAAATTAGCATTCCTGATAAAATGCTTAAGCAATTTTCTGATAAACTTTAATGGGATTAAGACTTGTTCTGGGAAACCAGTCACCCACCCAGCCGACTGTCAGTCAAGAGTCTAGTGACCTTTAACCAGACATTCTTTTCTTTTTGTATCTAGTCTAACAATGATTATCTAACCATTCTCTTTTCCTATAAAATGTCCCTACCAAGAGNGAATCTTTGAATTGGCCTNCTAGAGGCCTTTTCCCTTGCAGCAAGNTTGNAATAAAACTTTGACACGTGCTCATAACTAAATTGTCTGAAAAGTTTCTTTAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP7 | Stat5a::Stat5b | 71 | 79 | - | 15.12 | TTCCCAGAA |
| EUTREP7 | nhr-6 | 195 | 202 | - | 15.08 | AAAGGTCA |
| EUTREP7 | Stat4 | 146 | 155 | + | 15.02 | TTCTGGGAAA |
| EUTREP7 | E(spl)mgamma-HLH | 349 | 358 | - | 14.97 | GCACGTGTCA |
| EUTREP7 | PKNOX1 | 176 | 185 | - | 14.91 | TGACTGACAG |
| EUTREP7 | ref-1 | 351 | 358 | + | 14.90 | ACACGTGC |
| EUTREP7 | BZR2 | 349 | 358 | - | 14.85 | GCACGTGTCA |
| EUTREP7 | PK15505.1 | 351 | 358 | - | 14.75 | GCACGTGT |
| EUTREP7 | NR4A1 | 195 | 202 | - | 14.66 | AAAGGTCA |
| EUTREP7 | Nr2f6 | 195 | 207 | - | 14.66 | TGGTTAAAGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
