EUTREP4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001158 |
|---|---|
| TE superfamily | PiggyBac |
| TE class | DNA |
| Species | Eutheria |
| Length | 659 |
| Kimura value | 29.18 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | - |
| Sequence |
GTTCCCCTNCTTNCGTGTGTTTCCTTCATATTTTCTGCAGNCGTTTCAACTGAGTACTTGTTTCGGGCCTCATGGACCCAGCTATCTGGGAATAAGTTGTCATCTGNGGATAANCATTATNNNTATTTACAAGGTANAACGTTCCGTTTNGANAGAAGTNATGGCGCCTNATGGTGTCAAGAGGGGATGTGCATTCTGTTCTAGTTAAAAGNACAGGAAAACTGCCTTTCAGTGTACGTGTTGCAAGAAGCCAACGTGCACGGAGCACNATGCTTACCTTTGTGTTGATTGTGGACAGATAAATGAATAAATGATTGTCTATTTTGAGTATTAANATACAGTTGTTTCCATAGATACCTGATTATAATGACTAATTAGACAAAAGTAAGTGTTTTCCAAAGCCTATTTGAATTACANCTCTGATGTAATAAACTTCTAACTTCTTATTCAATTGGTACATGTTTCTTCTCATTTCTCTTTAAAAAAATCAATAAATNATTTGTGATGCCTTTAATAGAGATTAAATGAATAAAATCAGCTTTTACCTTATTATGAAGTTGATATTTTCAACATTTACCTTAAAAAGTAACATTGGGTCTGTCAGACCCAACGATCTGGGATTTGTTTGAAAAGTTTAATGATCTGNTTCCAGGGTTAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP4 | TCX3 | 403 | 414 | - | 13.36 | TAATTCAAATAG |
| EUTREP4 | ATHB-X | 309 | 317 | - | 13.36 | CAATCATTT |
| EUTREP4 | pal-1 | 425 | 432 | + | 13.31 | GTAATAAA |
| EUTREP4 | GRF6 | 599 | 605 | - | 13.30 | TCTGACA |
| EUTREP4 | POU4F1 | 304 | 315 | + | 13.23 | TGAATAAATGAT |
| EUTREP4 | HAT2 | 310 | 317 | - | 13.17 | CAATCATT |
| EUTREP4 | DOF1.7 | 581 | 591 | + | 13.17 | AAAAAGTAACA |
| EUTREP4 | MEF2A | 319 | 328 | - | 13.16 | CTCAAAATAG |
| EUTREP4 | RVE1 | 559 | 567 | - | 13.15 | AAAATATCA |
| EUTREP4 | SVP | 574 | 589 | + | 13.05 | TTACCTTAAAAAGTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
