EUTREP4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001158 |
|---|---|
| TE superfamily | PiggyBac |
| TE order | DNA |
| Species | Eutheria |
| Length | 659 |
| Kimura value | 29.18 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | - |
| Sequence |
GTTCCCCTNCTTNCGTGTGTTTCCTTCATATTTTCTGCAGNCGTTTCAACTGAGTACTTGTTTCGGGCCTCATGGACCCAGCTATCTGGGAATAAGTTGTCATCTGNGGATAANCATTATNNNTATTTACAAGGTANAACGTTCCGTTTNGANAGAAGTNATGGCGCCTNATGGTGTCAAGAGGGGATGTGCATTCTGTTCTAGTTAAAAGNACAGGAAAACTGCCTTTCAGTGTACGTGTTGCAAGAAGCCAACGTGCACGGAGCACNATGCTTACCTTTGTGTTGATTGTGGACAGATAAATGAATAAATGATTGTCTATTTTGAGTATTAANATACAGTTGTTTCCATAGATACCTGATTATAATGACTAATTAGACAAAAGTAAGTGTTTTCCAAAGCCTATTTGAATTACANCTCTGATGTAATAAACTTCTAACTTCTTATTCAATTGGTACATGTTTCTTCTCATTTCTCTTTAAAAAAATCAATAAATNATTTGTGATGCCTTTAATAGAGATTAAATGAATAAAATCAGCTTTTACCTTATTATGAAGTTGATATTTTCAACATTTACCTTAAAAAGTAACATTGGGTCTGTCAGACCCAACGATCTGGGATTTGTTTGAAAAGTTTAATGATCTGNTTCCAGGGTTAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP4 | NFIC | 240 | 254 | - | 4.12 | TTGGCTTCTTGCAAC |
| EUTREP4 | RFX1 | 343 | 358 | - | 3.94 | GGTATCTATGGAAACA |
| EUTREP4 | DOF4.3 | 531 | 543 | + | 3.39 | AAAATCAGCTTTT |
| EUTREP4 | ATF3 | 420 | 429 | - | 2.98 | ATTACATCAG |
| EUTREP4 | ATF3 | 420 | 429 | + | 2.77 | CTGATGTAAT |
| EUTREP4 | AT4G12670 | 617 | 645 | - | -13.29 | CAGATCATTAAACTTTTCAAACAAATCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
