EUTREP4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001158 |
|---|---|
| TE superfamily | PiggyBac |
| TE order | DNA |
| Species | Eutheria |
| Length | 659 |
| Kimura value | 29.18 |
| Tau index | 0.0000 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | - |
| Sequence |
GTTCCCCTNCTTNCGTGTGTTTCCTTCATATTTTCTGCAGNCGTTTCAACTGAGTACTTGTTTCGGGCCTCATGGACCCAGCTATCTGGGAATAAGTTGTCATCTGNGGATAANCATTATNNNTATTTACAAGGTANAACGTTCCGTTTNGANAGAAGTNATGGCGCCTNATGGTGTCAAGAGGGGATGTGCATTCTGTTCTAGTTAAAAGNACAGGAAAACTGCCTTTCAGTGTACGTGTTGCAAGAAGCCAACGTGCACGGAGCACNATGCTTACCTTTGTGTTGATTGTGGACAGATAAATGAATAAATGATTGTCTATTTTGAGTATTAANATACAGTTGTTTCCATAGATACCTGATTATAATGACTAATTAGACAAAAGTAAGTGTTTTCCAAAGCCTATTTGAATTACANCTCTGATGTAATAAACTTCTAACTTCTTATTCAATTGGTACATGTTTCTTCTCATTTCTCTTTAAAAAAATCAATAAATNATTTGTGATGCCTTTAATAGAGATTAAATGAATAAAATCAGCTTTTACCTTATTATGAAGTTGATATTTTCAACATTTACCTTAAAAAGTAACATTGGGTCTGTCAGACCCAACGATCTGGGATTTGTTTGAAAAGTTTAATGATCTGNTTCCAGGGTTAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP4 | ZNF24 | 301 | 313 | - | 14.63 | CATTTATTCATTT |
| EUTREP4 | ZNF417 | 162 | 168 | - | 14.55 | GGCGCCA |
| EUTREP4 | MEF2C | 318 | 328 | - | 14.53 | CTCAAAATAGA |
| EUTREP4 | AGL13 | 314 | 331 | - | 14.43 | ATACTCAAAATAGACAAT |
| EUTREP4 | NTL8 | 461 | 468 | - | 14.41 | GAAGAAAC |
| EUTREP4 | RFX2 | 344 | 357 | - | 14.27 | GTATCTATGGAAAC |
| EUTREP4 | WRKY46 | 247 | 256 | - | 14.22 | CGTTGGCTTC |
| EUTREP4 | ZAT6 | 310 | 317 | + | 14.13 | AATGATTG |
| EUTREP4 | ATHB-5 | 310 | 317 | - | 14.12 | CAATCATT |
| EUTREP4 | AGL16 | 575 | 589 | - | 13.98 | TTACTTTTTAAGGTA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
