EUTREP2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001223 |
|---|---|
| TE superfamily | hAT |
| TE class | DNA |
| Species | Eutheria |
| Length | 459 |
| Kimura value | 30.40 |
| Tau index | 0.9839 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | Present at orthologous sites in all eutheria, absent from marsupials. |
| Sequence |
CAGCAGTGCTTTTGTATTTTGTATAAAAAAGTGAGGTGCCGGTACTCATATCTTGATAAATTGTAAAATGCCTCTCCCACTTCTCCCCTCTTCCTGTCCACCTTTCCCCCCTTTCTACCNTTGCAATCTCCGGCACATGCGCGTTACACAGAATGCCAGGTGTAGGTCAACGGATGTCGCCGTGAAAAACAAGAAAAAGAAAAGCTTACCGCTTCTCAATGCTTGTTAGCGCGAAAACACAATGATACACTTTATATTTTTCGGTGGAGGGGTCATGTGGGTCAGCCCACGCATTGGCATGTGAACTTGTTGTTCCCGCCAAATGAGTCAGTCGAGATGGGAACGTTAATTTATTTGAGCGGACGTGTGTCAACGTCGCTCTGAAAAAAAAGGTGCCGGTACGCCGTACCGGCACGTACCGTCACCAAAAAAAGCACTGTGCTTAATTTTAGGNCCATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP2 | ZNF148 | 263 | 272 | - | 14.30 | CCCCTCCACC |
| EUTREP2 | WRKY15 | 165 | 172 | + | 14.29 | GGTCAACG |
| EUTREP2 | blmp-1 | 193 | 203 | + | 14.20 | GAAAAAGAAAA |
| EUTREP2 | FOS | 323 | 330 | - | 14.19 | TGACTCAT |
| EUTREP2 | DOF1.5 | 245 | 260 | - | 14.18 | AAAATATAAAGTGTAT |
| EUTREP2 | ERF::FOXO1 | 90 | 101 | - | 14.17 | GTGGACAGGAAG |
| EUTREP2 | WRKY20 | 165 | 172 | - | 14.15 | CGTTGACC |
| EUTREP2 | ewg | 133 | 142 | + | 14.12 | GCACATGCGC |
| EUTREP2 | ewg | 133 | 142 | - | 14.12 | GCGCATGTGC |
| EUTREP2 | NR2F1 | 268 | 279 | + | 14.08 | AGGGGTCATGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
