EUTREP2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001223 |
|---|---|
| TE superfamily | hAT |
| TE class | DNA |
| Species | Eutheria |
| Length | 459 |
| Kimura value | 30.40 |
| Tau index | 0.9839 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | Present at orthologous sites in all eutheria, absent from marsupials. |
| Sequence |
CAGCAGTGCTTTTGTATTTTGTATAAAAAAGTGAGGTGCCGGTACTCATATCTTGATAAATTGTAAAATGCCTCTCCCACTTCTCCCCTCTTCCTGTCCACCTTTCCCCCCTTTCTACCNTTGCAATCTCCGGCACATGCGCGTTACACAGAATGCCAGGTGTAGGTCAACGGATGTCGCCGTGAAAAACAAGAAAAAGAAAAGCTTACCGCTTCTCAATGCTTGTTAGCGCGAAAACACAATGATACACTTTATATTTTTCGGTGGAGGGGTCATGTGGGTCAGCCCACGCATTGGCATGTGAACTTGTTGTTCCCGCCAAATGAGTCAGTCGAGATGGGAACGTTAATTTATTTGAGCGGACGTGTGTCAACGTCGCTCTGAAAAAAAAGGTGCCGGTACGCCGTACCGGCACGTACCGTCACCAAAAAAAGCACTGTGCTTAATTTTAGGNCCATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP2 | E2F7 | 311 | 324 | + | 19.70 | TGTTCCCGCCAAAT |
| EUTREP2 | DOF3.6 | 183 | 203 | - | 19.15 | TTTTCTTTTTCTTGTTTTTCA |
| EUTREP2 | CDF5 | 183 | 203 | - | 17.41 | TTTTCTTTTTCTTGTTTTTCA |
| EUTREP2 | INO4 | 297 | 305 | + | 16.24 | GCATGTGAA |
| EUTREP2 | INO2 | 297 | 305 | + | 16.20 | GCATGTGAA |
| EUTREP2 | E2F8 | 313 | 321 | + | 15.69 | TTCCCGCCA |
| EUTREP2 | Eip75B | 275 | 284 | + | 15.51 | ATGTGGGTCA |
| EUTREP2 | PRDM9 | 92 | 111 | - | 15.46 | GGGGGGAAAGGTGGACAGGA |
| EUTREP2 | CDF5 | 188 | 208 | - | 15.33 | TAAGCTTTTCTTTTTCTTGTT |
| EUTREP2 | PPARA::RXRA | 98 | 114 | - | 15.31 | AAAGGGGGGAAAGGTGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
