EUTREP2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001223 |
|---|---|
| TE superfamily | hAT |
| TE class | DNA |
| Species | Eutheria |
| Length | 459 |
| Kimura value | 30.40 |
| Tau index | 0.9839 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | Present at orthologous sites in all eutheria, absent from marsupials. |
| Sequence |
CAGCAGTGCTTTTGTATTTTGTATAAAAAAGTGAGGTGCCGGTACTCATATCTTGATAAATTGTAAAATGCCTCTCCCACTTCTCCCCTCTTCCTGTCCACCTTTCCCCCCTTTCTACCNTTGCAATCTCCGGCACATGCGCGTTACACAGAATGCCAGGTGTAGGTCAACGGATGTCGCCGTGAAAAACAAGAAAAAGAAAAGCTTACCGCTTCTCAATGCTTGTTAGCGCGAAAACACAATGATACACTTTATATTTTTCGGTGGAGGGGTCATGTGGGTCAGCCCACGCATTGGCATGTGAACTTGTTGTTCCCGCCAAATGAGTCAGTCGAGATGGGAACGTTAATTTATTTGAGCGGACGTGTGTCAACGTCGCTCTGAAAAAAAAGGTGCCGGTACGCCGTACCGGCACGTACCGTCACCAAAAAAAGCACTGTGCTTAATTTTAGGNCCATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP2 | EWSR1-FLI1 | 89 | 106 | - | -8.68 | GAAAGGTGGACAGGAAGA |
| EUTREP2 | EWSR1-FLI1 | 98 | 115 | - | -11.07 | GAAAGGGGGGAAAGGTGG |
| EUTREP2 | BPC5 | 72 | 101 | - | -35.87 | GTGGACAGGAAGAGGGGAGAAGTGGGAGAG |
| EUTREP2 | BPC5 | 68 | 97 | - | -45.63 | ACAGGAAGAGGGGAGAAGTGGGAGAGGCAT |
| EUTREP2 | BPC5 | 78 | 107 | - | -47.27 | GGAAAGGTGGACAGGAAGAGGGGAGAAGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
