EUTREP2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001223 |
|---|---|
| TE superfamily | hAT |
| TE class | DNA |
| Species | Eutheria |
| Length | 459 |
| Kimura value | 30.40 |
| Tau index | 0.9839 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | Present at orthologous sites in all eutheria, absent from marsupials. |
| Sequence |
CAGCAGTGCTTTTGTATTTTGTATAAAAAAGTGAGGTGCCGGTACTCATATCTTGATAAATTGTAAAATGCCTCTCCCACTTCTCCCCTCTTCCTGTCCACCTTTCCCCCCTTTCTACCNTTGCAATCTCCGGCACATGCGCGTTACACAGAATGCCAGGTGTAGGTCAACGGATGTCGCCGTGAAAAACAAGAAAAAGAAAAGCTTACCGCTTCTCAATGCTTGTTAGCGCGAAAACACAATGATACACTTTATATTTTTCGGTGGAGGGGTCATGTGGGTCAGCCCACGCATTGGCATGTGAACTTGTTGTTCCCGCCAAATGAGTCAGTCGAGATGGGAACGTTAATTTATTTGAGCGGACGTGTGTCAACGTCGCTCTGAAAAAAAAGGTGCCGGTACGCCGTACCGGCACGTACCGTCACCAAAAAAAGCACTGTGCTTAATTTTAGGNCCATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP2 | WRKY38 | 165 | 172 | - | 14.54 | CGTTGACC |
| EUTREP2 | CDF3 | 26 | 33 | + | 14.46 | AAAAAGTG |
| EUTREP2 | usp | 269 | 277 | + | 14.45 | GGGGTCATG |
| EUTREP2 | SEP3 | 425 | 434 | - | 14.43 | CTTTTTTTGG |
| EUTREP2 | Zm00001d031796 | 175 | 184 | - | 14.43 | CACGGCGACA |
| EUTREP2 | PI | 190 | 203 | + | 14.42 | CAAGAAAAAGAAAA |
| EUTREP2 | AZF1 | 194 | 202 | + | 14.41 | AAAAAGAAA |
| EUTREP2 | RIN | 425 | 434 | - | 14.33 | CTTTTTTTGG |
| EUTREP2 | Jun | 323 | 330 | - | 14.31 | TGACTCAT |
| EUTREP2 | DOF5.8 | 185 | 203 | - | 14.30 | TTTTCTTTTTCTTGTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
