EUTREP2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001223 |
|---|---|
| TE superfamily | hAT |
| TE class | DNA |
| Species | Eutheria |
| Length | 459 |
| Kimura value | 30.40 |
| Tau index | 0.9839 |
| Description | Conserved repetitive element present in placental mammals. |
| Comment | Present at orthologous sites in all eutheria, absent from marsupials. |
| Sequence |
CAGCAGTGCTTTTGTATTTTGTATAAAAAAGTGAGGTGCCGGTACTCATATCTTGATAAATTGTAAAATGCCTCTCCCACTTCTCCCCTCTTCCTGTCCACCTTTCCCCCCTTTCTACCNTTGCAATCTCCGGCACATGCGCGTTACACAGAATGCCAGGTGTAGGTCAACGGATGTCGCCGTGAAAAACAAGAAAAAGAAAAGCTTACCGCTTCTCAATGCTTGTTAGCGCGAAAACACAATGATACACTTTATATTTTTCGGTGGAGGGGTCATGTGGGTCAGCCCACGCATTGGCATGTGAACTTGTTGTTCCCGCCAAATGAGTCAGTCGAGATGGGAACGTTAATTTATTTGAGCGGACGTGTGTCAACGTCGCTCTGAAAAAAAAGGTGCCGGTACGCCGTACCGGCACGTACCGTCACCAAAAAAAGCACTGTGCTTAATTTTAGGNCCATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| EUTREP2 | E2F6 | 313 | 320 | - | 15.29 | GGCGGGAA |
| EUTREP2 | WRKY30 | 164 | 172 | + | 15.23 | AGGTCAACG |
| EUTREP2 | DOF3.6 | 188 | 208 | - | 15.09 | TAAGCTTTTCTTTTTCTTGTT |
| EUTREP2 | HINFP | 359 | 366 | - | 14.89 | ACGTCCGC |
| EUTREP2 | WRKY31 | 165 | 172 | + | 14.79 | GGTCAACG |
| EUTREP2 | WRKY25 | 165 | 172 | + | 14.77 | GGTCAACG |
| EUTREP2 | TFDP1 | 313 | 320 | - | 14.70 | GGCGGGAA |
| EUTREP2 | WRKY12 | 165 | 172 | - | 14.69 | CGTTGACC |
| EUTREP2 | WRKY55 | 164 | 172 | - | 14.68 | CGTTGACCT |
| EUTREP2 | WRKY47 | 164 | 172 | - | 14.63 | CGTTGACCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
