ERVL-E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000120 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 5667 |
| Kimura value | 35.44 |
| Tau index | 0.8922 |
| Description | ERVL endogenous retrovirus, ERVL-E subfamily |
| Comment | MLT2E LTRs. ORFs at roughly pos 131-1720, 1725-5267. |
| Sequence |
ATTATTGGTACCGGGAGTGGTTCCAGGGGAACAGAACCTTAAGGATGGGAATCTGGAATTGGTTCTCTGATCTGATTAGATTTAAAGGCGCTAATGACCCTGTTTCCAGTGGTAAAGGGGACACTGGTAGTCCATGGCATGCAGTGGCAAAAAGTTACTCAAATTATCACCTGTGGNCACCTGTAATCAAGTGCCTATAGAAGGCAAGGCTTTGGGTGACCANGTANTTGCTGCCNTAGAACATTTTAGTGGAAATAAGGAGTATAATGANGTTGGTTGGTTGCTTCTAANTGCGCTGGAGAACTTGGAGAAAGAAAATGATGAGCTCAGGGCTTTAAATTCCCAGCTCAAGNTCCGGGTAAGGGACCNGAAAGCTTCTATGACTGCCCTGAAAGAAACCCTTATCTCCTGTAGCCGCAGGGCTGAGATTTCTGAAAACCAAACCCAAAGTCTNATCCTGCGGGTGGCTGAATTACAACGCAAATTGAATTCNCAACCTCGCAGGGTNTCTTNTGTTAAAGTTAGGGCATTGATTGGGAAGGAATGGGACCCTGAAAATTGGAATGGGGACATNTGGGCGGATTCCGATGAAGCTGGGGACCTTGAACCCCTAAATTCTGCCGAGCCTTCTTTGCCAGTAGAAGCAGCCCTTTCNCCCCTGTCTGAGGAGGTTAGTCTCCCCTTGCCTGAAGAANCTGTAATGGCCTCCCCTGAGGTAGTTGCCTTGCAAGGNANTGCTGATTCTCCTCAGGACCTACCCCCACCACCTCTCNTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCNAGGGGTNAGGTACAAAGTGTGACCCATGAGGAGGTANNNTACACACCAAAAGAATTGCAAGATTTTNCCAATTTATATCGACAGAAACCTGGGGAATATGTGTGGGAATGGATNCTAAGGGTGTTGGATCANGGTGGAAGGAATATAACGTTGGATCGGGCCGAATTTATTGATATGGGTNCACTAAGCAGAGATTCTGGATTCAATGTGTTAGCTCGAGNAGCTGGAAGTGGCTCTAACAGTTTGCTTGGTTGGTTGACTGAAACNTGGACTCAAAGGTGGCCTACANTNAATGAAGTTGAGATGCCAGAACTTCCTTGGTATANTGTAGAGGAAGGNATCCAAAGGCTTAGGGAGATNGGAATGTTGGAGTGGATTTATCATGTAAGACCTGCTCACCTACACCCTCTAACTATGTCCCCGGGAGGGTCCAGGGACACTCCCTTCACCAAGGCNTTGAGAAATACATTNGTGAGGGGAGCACCAGCATCCTTGAAGAGCTCTGTGGTGGCTNTTCTCTGTAGGCCAGGNATGACGGTGGGAGATGCTGCCATTGAAATGGGCTCCCTGANTTCAATGGGGATGATGGGATCCCGGGGTGGCAGAGGCCAAGTGGCGGCACTTAACCGCCAGAGACAAGGTGGGCGCGGTTACCGTAATGGGCAGCAGAGCCAAAGCGGTAATCAGAATGGTTTGACCCGCAGAGATCTTTGGCGNTGGCTAATTGATCATGGTGTCCCTAGGANTGAAATAGATGGGCAGCCTACTAAAGTCTTACTTGATTTGTATAAGCAGAAAAGCTCTAGGTCTGGTGAACAGAAGTCTGACTTGAGTCACCAACGGAGAGTCACGGCCCCTCANCCAGTTCCCAGACTTGAGCCAGTTCACAGCCAGACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTTGAGGAAGGACCCTGCNACACTGCCAAAAATNTATACTGTAAATCTTCCTCCNAGCCTTCCCCAAAGGGACCTGCGGCCATTTACCAGGGTGACTGTGCACTGGGGAAAGGGAAATANCCAGACTTTTNAGGGATTACTGGACACTGGCTCTGAACTGACGCTAATTCCTGGAGACCCAAAACGCCACTGTGGTCCACCAGTCAGAGTAGGGGCTTATGGAGGTCAGGTGATNAATGGAGTTTTGGCTCGAGTCCGTCTCACAGTGGGCCCAGTGGGTCCNCGAACCCACCCTGTGGTTATTTCCCCAGTTCCNGAATGCATAGTTGGAATAGACATACTCAGCAACTGGCAGAATCCCCACATTGGTTCCCTGACCCGTGGAGTGAGGGCTATTATGGTAGGAAAGGCCAAGTGGAAGCCNCTGGAACTGCCTCTNCCTACCAAAATAGTAAACCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAAGACTTGAAAGATGCAGGGGTGGTGATTCCTACCACATCCCCATTTAACTCGCCTGTTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAACTTAATCAGGTGGTGACTCCAATTGCAGCTGCTGTTCCAGATGTGGTNTCTTTACTGGAGCAAATCAACACANCCCCTGGCACCTGGTATGCAGCTATTGATCTGGCAAATGCTTTTTTCTCTATACCTGTTAGTAAAGACCACCAGAAGCAGTTTGCTTTCACCTGGCAGGGNCAGCAGTACACCTTCACTGTCTTGCCTCAGGGCTATGTCAACTCTCCNGCTCTCTGTCATAATNTAGTCCGCAGGGACCTTGATCGTCTTNNCATTCCACAGGACATCACGCTGGTCCACTACATTGATGACATCATGCTGATTGGACCTGGTGAGCAGGAAGTAGCAAGTACTCTAGACGCCTTGGTAAGACACATGCGTGCCAGAGGGTGGGAGATAAATCCCACGAAAATTCAGGGGCCTGCCACCTCGGTGAAGTTTCTAGGGGTCCAGTGGTCTGGGGCATGTCGAGATATCCCTTCCAAGGTGAAGGACAAGTTGCTGCATCTNGCNCCTCCTACCACTAAGAAAGAGGCACAATGCTTGGTGGGCCTCTTTGGATTTTGGAGGCAACATATACCNCATTTGGGCGTGCTGCTCCGACCCATTTACCGAGTAACCCGNAAGGCTGCCAGTTTTGAGTGGGGCCCAGAGCAAGAGAAGGCTCTGCAGCAGGTCCAGGCTGCNGTGCAAGCTGCTCTGCCACTTGGGCCNTATGACCCAGCAGATCCAATGGTGCTCGAAGTGTCTGTGGCAGATAGGGATGCTGTATGGAGCCTCTGGCAAGCCCCNATAGGNGAATCACAGCGCAGACCCCTAGGATTTTGGAGCAAAGCCATGCCATCTTCTGCAGATAACTATTCTCCTTTTGAGAAACAGCTCCTGGCTTGCTACTGGGCCCTGGTAGAGACTGAACGCCTGACCATGGGNCACCAAGTNACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCGTGCACAGCAGCANTCCATCATCAAGTGGAAGTGGTATATACGAGATCGGGCTCGAGCAGGTCCNGAAGGCACAAGTAAGTTGCATGAGCAGGTGGCTCAGACTCCCATGGCNCCTACTCCTGCTGCATTGCCTCCTCTCCCTCAACCCGCACCTATGGCCTCATGGGGAGTTCCCTATGACCAGTTGACTGAGGAAGAAAAAACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCTGGCACCANCCGAAAGTGGACGGCTGCAGCACTACAGCCCCACTCAGGGGTGGCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTCCACTTTGCCTGGAAGGAGAGATGGCCAGAGGTACGGATCTACACTGATTCATGGGCAGTGGCTAACGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACANGATTGGAAGATTGGTGACAAGGAGGTCTGGGGAAGAGGTATGTGGATGGACCTCTCGGAATGGGCACAGAGTGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGCANCCNCNGCAGAGGAGGNTCTCAATAATCAGGTGGACAAGATGACCCGTTCTGTGGATGTCAGTCAGCCTCTTTCCCCAGCCACCCCNGTGCTTGCTCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGCTATGCATGGGCTCAGCAACATGGACTTCCNCTCACCAAGGCTGATCTGGCTACNGCCACTGCTGAGTGCCCAACCTGCCAACAGCAGAGACCAACGCTGAGCCCCCGATATGGCACCATTCCCCGGGGGGACCAGCCAGCCACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGATTTGTCCTCACTGGAATAGACACTTATTCTGGATATGGATTTGCCTTCCCTGCCCGCAATGCTTCTGCCAGNACCACCATCCGTGGACTTACAGAATGCCTTATTCACCGTCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCATTTTACAGCAAANGAAGTGCGGCAATGGGCTCATGCCCATGGAATTCACTGGTCTTACCACGTNCCCCATCACCCNGAAGCAGCTGGCCTGATAGAACGGTGGAATGGCCTNTTGAAGACTCAGTTACGGCGCCAGCTGGGNGACAACACCTTGNAGGGCTGGGGTNNTGTCCTNCAGGATGCGGTATATGCTCTGAATCAGCGACCAATATATGGTGCTGTTTCTCCCATAGCCAGAATNCACGGGTCCGGGAATCAAGGGGTGGAAGTGGGAGTGGCTCCTCTCACTATTACNCCTAATGACCCACTNGCAAAATTTTTGCTTCCCGTCCCCGCAACTTTGGGCTCTGCTGGTTTAGAGGTCTTAGTTCCCAAGGGAGGAATGCTTCCACCAGGGGACACAACAATGGTTCCATTGAACTGGAAGCTGAGACTGCCACCTGGCCACTTTGGGCTCCTCATGCCACTGAACCAACAGGCAAAGAAGGGAGTTACTGTACTGGCTGGGGTGATTGATCCTGATTATCAAGGGGAAATTGGGTTGCTGCTACACAATGGGGGCAAGGAGGANTATGTCTGGAATNCAGGAGATCCTCTGGGGCGCCTCTTAGTACTCCCATGTCCNGTGATAAAAGTTAATGGAAAACTACAGCAACCCAATANAGGCAGGACCGCTAANGGCTCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCACCAGGCAAAGAACCACGACCAGCTGAGGTGCTNGCTGAGGGCAAAGGGAATATGGAATGGGTAGTGGAAGAAGGAAGTTATAAATACCAGCTACGACCNCGTGACCAGTTGCAGAAACGAGGACTGTAGTAGTTATGNGTATTTCTTCCTTGCTTTGATATGAATATATTTGTGATATATATATTAACNAATATCTTTNTTTTCTTTCCTCTCTCATTCCCCTACTATCTAACATAAGATGTGTTAATAGTAGTTAACCTTATATCTCAGTATTTAAGTTACAGGATATCAAAGGGGGANTGTGACTCAGCTAGAAGAGNAATGAACATCACCCAGAGATGGATAAAGTGACNTNTGGGACTTTGTATCCTCTTTTGGGGAGAGGGTTAGCGTGTTTTCGGTTGTACGAGGGATAGTTGCATCATGTTAGGCGGAAGCATGATTTTGCTATTGTCTTTATTTGGAAGTTAAATATGGTTNAAAGAGGTGTGTATGGATGCCGAGTTGACAAGGGGTGGAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL-E | TCP23 | 2007 | 2014 | - | 16.36 | GGGCCCAC |
| ERVL-E | ATF2 | 2665 | 2674 | - | 16.33 | ATGATGTCAT |
| ERVL-E | ZNF331 | 4090 | 4099 | - | 16.18 | TGCTGAGCCC |
| ERVL-E | ZNF189 | 2393 | 2401 | + | 16.13 | TGCTGTTCC |
| ERVL-E | LjSGA_053525.1 | 2007 | 2014 | - | 16.05 | GGGCCCAC |
| ERVL-E | SREBF1 | 5139 | 5148 | + | 16.05 | GTCACCCCAC |
| ERVL-E | ZNF331 | 3019 | 3028 | - | 16.05 | TGCAGAGCCT |
| ERVL-E | Gfi1B | 422 | 431 | - | 15.95 | AAATCTCAGC |
| ERVL-E | AP3 | 5513 | 5525 | - | 15.87 | CCAAAAGAGGATA |
| ERVL-E | ATF4 | 5563 | 5572 | - | 15.85 | ATGATGCAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
