ERVL-E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000120 |
|---|---|
| TE superfamily | ERV3 |
| TE order | LTR |
| Species | Eutheria |
| Length | 5667 |
| Kimura value | 35.44 |
| Tau index | 0.8922 |
| Description | ERVL endogenous retrovirus, ERVL-E subfamily |
| Comment | MLT2E LTRs. ORFs at roughly pos 131-1720, 1725-5267. |
| Sequence |
ATTATTGGTACCGGGAGTGGTTCCAGGGGAACAGAACCTTAAGGATGGGAATCTGGAATTGGTTCTCTGATCTGATTAGATTTAAAGGCGCTAATGACCCTGTTTCCAGTGGTAAAGGGGACACTGGTAGTCCATGGCATGCAGTGGCAAAAAGTTACTCAAATTATCACCTGTGGNCACCTGTAATCAAGTGCCTATAGAAGGCAAGGCTTTGGGTGACCANGTANTTGCTGCCNTAGAACATTTTAGTGGAAATAAGGAGTATAATGANGTTGGTTGGTTGCTTCTAANTGCGCTGGAGAACTTGGAGAAAGAAAATGATGAGCTCAGGGCTTTAAATTCCCAGCTCAAGNTCCGGGTAAGGGACCNGAAAGCTTCTATGACTGCCCTGAAAGAAACCCTTATCTCCTGTAGCCGCAGGGCTGAGATTTCTGAAAACCAAACCCAAAGTCTNATCCTGCGGGTGGCTGAATTACAACGCAAATTGAATTCNCAACCTCGCAGGGTNTCTTNTGTTAAAGTTAGGGCATTGATTGGGAAGGAATGGGACCCTGAAAATTGGAATGGGGACATNTGGGCGGATTCCGATGAAGCTGGGGACCTTGAACCCCTAAATTCTGCCGAGCCTTCTTTGCCAGTAGAAGCAGCCCTTTCNCCCCTGTCTGAGGAGGTTAGTCTCCCCTTGCCTGAAGAANCTGTAATGGCCTCCCCTGAGGTAGTTGCCTTGCAAGGNANTGCTGATTCTCCTCAGGACCTACCCCCACCACCTCTCNTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCNAGGGGTNAGGTACAAAGTGTGACCCATGAGGAGGTANNNTACACACCAAAAGAATTGCAAGATTTTNCCAATTTATATCGACAGAAACCTGGGGAATATGTGTGGGAATGGATNCTAAGGGTGTTGGATCANGGTGGAAGGAATATAACGTTGGATCGGGCCGAATTTATTGATATGGGTNCACTAAGCAGAGATTCTGGATTCAATGTGTTAGCTCGAGNAGCTGGAAGTGGCTCTAACAGTTTGCTTGGTTGGTTGACTGAAACNTGGACTCAAAGGTGGCCTACANTNAATGAAGTTGAGATGCCAGAACTTCCTTGGTATANTGTAGAGGAAGGNATCCAAAGGCTTAGGGAGATNGGAATGTTGGAGTGGATTTATCATGTAAGACCTGCTCACCTACACCCTCTAACTATGTCCCCGGGAGGGTCCAGGGACACTCCCTTCACCAAGGCNTTGAGAAATACATTNGTGAGGGGAGCACCAGCATCCTTGAAGAGCTCTGTGGTGGCTNTTCTCTGTAGGCCAGGNATGACGGTGGGAGATGCTGCCATTGAAATGGGCTCCCTGANTTCAATGGGGATGATGGGATCCCGGGGTGGCAGAGGCCAAGTGGCGGCACTTAACCGCCAGAGACAAGGTGGGCGCGGTTACCGTAATGGGCAGCAGAGCCAAAGCGGTAATCAGAATGGTTTGACCCGCAGAGATCTTTGGCGNTGGCTAATTGATCATGGTGTCCCTAGGANTGAAATAGATGGGCAGCCTACTAAAGTCTTACTTGATTTGTATAAGCAGAAAAGCTCTAGGTCTGGTGAACAGAAGTCTGACTTGAGTCACCAACGGAGAGTCACGGCCCCTCANCCAGTTCCCAGACTTGAGCCAGTTCACAGCCAGACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTTGAGGAAGGACCCTGCNACACTGCCAAAAATNTATACTGTAAATCTTCCTCCNAGCCTTCCCCAAAGGGACCTGCGGCCATTTACCAGGGTGACTGTGCACTGGGGAAAGGGAAATANCCAGACTTTTNAGGGATTACTGGACACTGGCTCTGAACTGACGCTAATTCCTGGAGACCCAAAACGCCACTGTGGTCCACCAGTCAGAGTAGGGGCTTATGGAGGTCAGGTGATNAATGGAGTTTTGGCTCGAGTCCGTCTCACAGTGGGCCCAGTGGGTCCNCGAACCCACCCTGTGGTTATTTCCCCAGTTCCNGAATGCATAGTTGGAATAGACATACTCAGCAACTGGCAGAATCCCCACATTGGTTCCCTGACCCGTGGAGTGAGGGCTATTATGGTAGGAAAGGCCAAGTGGAAGCCNCTGGAACTGCCTCTNCCTACCAAAATAGTAAACCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAAGACTTGAAAGATGCAGGGGTGGTGATTCCTACCACATCCCCATTTAACTCGCCTGTTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAACTTAATCAGGTGGTGACTCCAATTGCAGCTGCTGTTCCAGATGTGGTNTCTTTACTGGAGCAAATCAACACANCCCCTGGCACCTGGTATGCAGCTATTGATCTGGCAAATGCTTTTTTCTCTATACCTGTTAGTAAAGACCACCAGAAGCAGTTTGCTTTCACCTGGCAGGGNCAGCAGTACACCTTCACTGTCTTGCCTCAGGGCTATGTCAACTCTCCNGCTCTCTGTCATAATNTAGTCCGCAGGGACCTTGATCGTCTTNNCATTCCACAGGACATCACGCTGGTCCACTACATTGATGACATCATGCTGATTGGACCTGGTGAGCAGGAAGTAGCAAGTACTCTAGACGCCTTGGTAAGACACATGCGTGCCAGAGGGTGGGAGATAAATCCCACGAAAATTCAGGGGCCTGCCACCTCGGTGAAGTTTCTAGGGGTCCAGTGGTCTGGGGCATGTCGAGATATCCCTTCCAAGGTGAAGGACAAGTTGCTGCATCTNGCNCCTCCTACCACTAAGAAAGAGGCACAATGCTTGGTGGGCCTCTTTGGATTTTGGAGGCAACATATACCNCATTTGGGCGTGCTGCTCCGACCCATTTACCGAGTAACCCGNAAGGCTGCCAGTTTTGAGTGGGGCCCAGAGCAAGAGAAGGCTCTGCAGCAGGTCCAGGCTGCNGTGCAAGCTGCTCTGCCACTTGGGCCNTATGACCCAGCAGATCCAATGGTGCTCGAAGTGTCTGTGGCAGATAGGGATGCTGTATGGAGCCTCTGGCAAGCCCCNATAGGNGAATCACAGCGCAGACCCCTAGGATTTTGGAGCAAAGCCATGCCATCTTCTGCAGATAACTATTCTCCTTTTGAGAAACAGCTCCTGGCTTGCTACTGGGCCCTGGTAGAGACTGAACGCCTGACCATGGGNCACCAAGTNACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCGTGCACAGCAGCANTCCATCATCAAGTGGAAGTGGTATATACGAGATCGGGCTCGAGCAGGTCCNGAAGGCACAAGTAAGTTGCATGAGCAGGTGGCTCAGACTCCCATGGCNCCTACTCCTGCTGCATTGCCTCCTCTCCCTCAACCCGCACCTATGGCCTCATGGGGAGTTCCCTATGACCAGTTGACTGAGGAAGAAAAAACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCTGGCACCANCCGAAAGTGGACGGCTGCAGCACTACAGCCCCACTCAGGGGTGGCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTCCACTTTGCCTGGAAGGAGAGATGGCCAGAGGTACGGATCTACACTGATTCATGGGCAGTGGCTAACGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACANGATTGGAAGATTGGTGACAAGGAGGTCTGGGGAAGAGGTATGTGGATGGACCTCTCGGAATGGGCACAGAGTGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGCANCCNCNGCAGAGGAGGNTCTCAATAATCAGGTGGACAAGATGACCCGTTCTGTGGATGTCAGTCAGCCTCTTTCCCCAGCCACCCCNGTGCTTGCTCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGCTATGCATGGGCTCAGCAACATGGACTTCCNCTCACCAAGGCTGATCTGGCTACNGCCACTGCTGAGTGCCCAACCTGCCAACAGCAGAGACCAACGCTGAGCCCCCGATATGGCACCATTCCCCGGGGGGACCAGCCAGCCACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGATTTGTCCTCACTGGAATAGACACTTATTCTGGATATGGATTTGCCTTCCCTGCCCGCAATGCTTCTGCCAGNACCACCATCCGTGGACTTACAGAATGCCTTATTCACCGTCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCATTTTACAGCAAANGAAGTGCGGCAATGGGCTCATGCCCATGGAATTCACTGGTCTTACCACGTNCCCCATCACCCNGAAGCAGCTGGCCTGATAGAACGGTGGAATGGCCTNTTGAAGACTCAGTTACGGCGCCAGCTGGGNGACAACACCTTGNAGGGCTGGGGTNNTGTCCTNCAGGATGCGGTATATGCTCTGAATCAGCGACCAATATATGGTGCTGTTTCTCCCATAGCCAGAATNCACGGGTCCGGGAATCAAGGGGTGGAAGTGGGAGTGGCTCCTCTCACTATTACNCCTAATGACCCACTNGCAAAATTTTTGCTTCCCGTCCCCGCAACTTTGGGCTCTGCTGGTTTAGAGGTCTTAGTTCCCAAGGGAGGAATGCTTCCACCAGGGGACACAACAATGGTTCCATTGAACTGGAAGCTGAGACTGCCACCTGGCCACTTTGGGCTCCTCATGCCACTGAACCAACAGGCAAAGAAGGGAGTTACTGTACTGGCTGGGGTGATTGATCCTGATTATCAAGGGGAAATTGGGTTGCTGCTACACAATGGGGGCAAGGAGGANTATGTCTGGAATNCAGGAGATCCTCTGGGGCGCCTCTTAGTACTCCCATGTCCNGTGATAAAAGTTAATGGAAAACTACAGCAACCCAATANAGGCAGGACCGCTAANGGCTCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCACCAGGCAAAGAACCACGACCAGCTGAGGTGCTNGCTGAGGGCAAAGGGAATATGGAATGGGTAGTGGAAGAAGGAAGTTATAAATACCAGCTACGACCNCGTGACCAGTTGCAGAAACGAGGACTGTAGTAGTTATGNGTATTTCTTCCTTGCTTTGATATGAATATATTTGTGATATATATATTAACNAATATCTTTNTTTTCTTTCCTCTCTCATTCCCCTACTATCTAACATAAGATGTGTTAATAGTAGTTAACCTTATATCTCAGTATTTAAGTTACAGGATATCAAAGGGGGANTGTGACTCAGCTAGAAGAGNAATGAACATCACCCAGAGATGGATAAAGTGACNTNTGGGACTTTGTATCCTCTTTTGGGGAGAGGGTTAGCGTGTTTTCGGTTGTACGAGGGATAGTTGCATCATGTTAGGCGGAAGCATGATTTTGCTATTGTCTTTATTTGGAAGTTAAATATGGTTNAAAGAGGTGTGTATGGATGCCGAGTTGACAAGGGGTGGAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL-E | CTCF | 4219 | 4251 | - | 19.60 | GTCCAATGTAATCAACCTGCCACCAGGTGGCTG |
| ERVL-E | CTCF | 4219 | 4233 | - | 17.62 | GCCACCAGGTGGCTG |
| ERVL-E | CTCF | 4817 | 4831 | + | 17.44 | TCCACCAGGGGACAC |
| ERVL-E | ZmbZIP57 | 2665 | 2674 | - | 17.44 | ATGATGTCAT |
| ERVL-E | ZmbZIP25 | 2664 | 2673 | + | 17.39 | GATGACATCA |
| ERVL-E | ZmbZIP72 | 2664 | 2673 | + | 17.37 | GATGACATCA |
| ERVL-E | TCP7 | 2999 | 3009 | + | 17.20 | GTGGGGCCCAG |
| ERVL-E | ZBTB18 | 2398 | 2408 | + | 17.11 | TTCCAGATGTG |
| ERVL-E | JUN | 2665 | 2674 | - | 17.08 | ATGATGTCAT |
| ERVL-E | TGA6 | 2665 | 2674 | - | 16.80 | ATGATGTCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
