ERVL-E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000120 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Eutheria |
| Length | 5667 |
| Kimura value | 35.44 |
| Tau index | 0.8922 |
| Description | ERVL endogenous retrovirus, ERVL-E subfamily |
| Comment | MLT2E LTRs. ORFs at roughly pos 131-1720, 1725-5267. |
| Sequence |
ATTATTGGTACCGGGAGTGGTTCCAGGGGAACAGAACCTTAAGGATGGGAATCTGGAATTGGTTCTCTGATCTGATTAGATTTAAAGGCGCTAATGACCCTGTTTCCAGTGGTAAAGGGGACACTGGTAGTCCATGGCATGCAGTGGCAAAAAGTTACTCAAATTATCACCTGTGGNCACCTGTAATCAAGTGCCTATAGAAGGCAAGGCTTTGGGTGACCANGTANTTGCTGCCNTAGAACATTTTAGTGGAAATAAGGAGTATAATGANGTTGGTTGGTTGCTTCTAANTGCGCTGGAGAACTTGGAGAAAGAAAATGATGAGCTCAGGGCTTTAAATTCCCAGCTCAAGNTCCGGGTAAGGGACCNGAAAGCTTCTATGACTGCCCTGAAAGAAACCCTTATCTCCTGTAGCCGCAGGGCTGAGATTTCTGAAAACCAAACCCAAAGTCTNATCCTGCGGGTGGCTGAATTACAACGCAAATTGAATTCNCAACCTCGCAGGGTNTCTTNTGTTAAAGTTAGGGCATTGATTGGGAAGGAATGGGACCCTGAAAATTGGAATGGGGACATNTGGGCGGATTCCGATGAAGCTGGGGACCTTGAACCCCTAAATTCTGCCGAGCCTTCTTTGCCAGTAGAAGCAGCCCTTTCNCCCCTGTCTGAGGAGGTTAGTCTCCCCTTGCCTGAAGAANCTGTAATGGCCTCCCCTGAGGTAGTTGCCTTGCAAGGNANTGCTGATTCTCCTCAGGACCTACCCCCACCACCTCTCNTTGCTTCTAGACCTATAACTAGACTCAAGTCCCAGCAGGCCCCNAGGGGTNAGGTACAAAGTGTGACCCATGAGGAGGTANNNTACACACCAAAAGAATTGCAAGATTTTNCCAATTTATATCGACAGAAACCTGGGGAATATGTGTGGGAATGGATNCTAAGGGTGTTGGATCANGGTGGAAGGAATATAACGTTGGATCGGGCCGAATTTATTGATATGGGTNCACTAAGCAGAGATTCTGGATTCAATGTGTTAGCTCGAGNAGCTGGAAGTGGCTCTAACAGTTTGCTTGGTTGGTTGACTGAAACNTGGACTCAAAGGTGGCCTACANTNAATGAAGTTGAGATGCCAGAACTTCCTTGGTATANTGTAGAGGAAGGNATCCAAAGGCTTAGGGAGATNGGAATGTTGGAGTGGATTTATCATGTAAGACCTGCTCACCTACACCCTCTAACTATGTCCCCGGGAGGGTCCAGGGACACTCCCTTCACCAAGGCNTTGAGAAATACATTNGTGAGGGGAGCACCAGCATCCTTGAAGAGCTCTGTGGTGGCTNTTCTCTGTAGGCCAGGNATGACGGTGGGAGATGCTGCCATTGAAATGGGCTCCCTGANTTCAATGGGGATGATGGGATCCCGGGGTGGCAGAGGCCAAGTGGCGGCACTTAACCGCCAGAGACAAGGTGGGCGCGGTTACCGTAATGGGCAGCAGAGCCAAAGCGGTAATCAGAATGGTTTGACCCGCAGAGATCTTTGGCGNTGGCTAATTGATCATGGTGTCCCTAGGANTGAAATAGATGGGCAGCCTACTAAAGTCTTACTTGATTTGTATAAGCAGAAAAGCTCTAGGTCTGGTGAACAGAAGTCTGACTTGAGTCACCAACGGAGAGTCACGGCCCCTCANCCAGTTCCCAGACTTGAGCCAGTTCACAGCCAGACCCCTTGAATGAAGGGGAGGCCGGGTCCCCTTGAGGAAGGACCCTGCNACACTGCCAAAAATNTATACTGTAAATCTTCCTCCNAGCCTTCCCCAAAGGGACCTGCGGCCATTTACCAGGGTGACTGTGCACTGGGGAAAGGGAAATANCCAGACTTTTNAGGGATTACTGGACACTGGCTCTGAACTGACGCTAATTCCTGGAGACCCAAAACGCCACTGTGGTCCACCAGTCAGAGTAGGGGCTTATGGAGGTCAGGTGATNAATGGAGTTTTGGCTCGAGTCCGTCTCACAGTGGGCCCAGTGGGTCCNCGAACCCACCCTGTGGTTATTTCCCCAGTTCCNGAATGCATAGTTGGAATAGACATACTCAGCAACTGGCAGAATCCCCACATTGGTTCCCTGACCCGTGGAGTGAGGGCTATTATGGTAGGAAAGGCCAAGTGGAAGCCNCTGGAACTGCCTCTNCCTACCAAAATAGTAAACCAAAAGCAATACCGCATCCCTGGAGGAATTGCAGAGATTAGTGCCACCATCAAAGACTTGAAAGATGCAGGGGTGGTGATTCCTACCACATCCCCATTTAACTCGCCTGTTTGGCCTGTGCAGAAGACAGATGGATCTTGGAGAATGACAGTGGATTATCGTAAACTTAATCAGGTGGTGACTCCAATTGCAGCTGCTGTTCCAGATGTGGTNTCTTTACTGGAGCAAATCAACACANCCCCTGGCACCTGGTATGCAGCTATTGATCTGGCAAATGCTTTTTTCTCTATACCTGTTAGTAAAGACCACCAGAAGCAGTTTGCTTTCACCTGGCAGGGNCAGCAGTACACCTTCACTGTCTTGCCTCAGGGCTATGTCAACTCTCCNGCTCTCTGTCATAATNTAGTCCGCAGGGACCTTGATCGTCTTNNCATTCCACAGGACATCACGCTGGTCCACTACATTGATGACATCATGCTGATTGGACCTGGTGAGCAGGAAGTAGCAAGTACTCTAGACGCCTTGGTAAGACACATGCGTGCCAGAGGGTGGGAGATAAATCCCACGAAAATTCAGGGGCCTGCCACCTCGGTGAAGTTTCTAGGGGTCCAGTGGTCTGGGGCATGTCGAGATATCCCTTCCAAGGTGAAGGACAAGTTGCTGCATCTNGCNCCTCCTACCACTAAGAAAGAGGCACAATGCTTGGTGGGCCTCTTTGGATTTTGGAGGCAACATATACCNCATTTGGGCGTGCTGCTCCGACCCATTTACCGAGTAACCCGNAAGGCTGCCAGTTTTGAGTGGGGCCCAGAGCAAGAGAAGGCTCTGCAGCAGGTCCAGGCTGCNGTGCAAGCTGCTCTGCCACTTGGGCCNTATGACCCAGCAGATCCAATGGTGCTCGAAGTGTCTGTGGCAGATAGGGATGCTGTATGGAGCCTCTGGCAAGCCCCNATAGGNGAATCACAGCGCAGACCCCTAGGATTTTGGAGCAAAGCCATGCCATCTTCTGCAGATAACTATTCTCCTTTTGAGAAACAGCTCCTGGCTTGCTACTGGGCCCTGGTAGAGACTGAACGCCTGACCATGGGNCACCAAGTNACCATGCGACCTGAGCTGCCCATCATGAACTGGGTGTTATCTGACCCACCAAGCCATAAAGTTGGGCGTGCACAGCAGCANTCCATCATCAAGTGGAAGTGGTATATACGAGATCGGGCTCGAGCAGGTCCNGAAGGCACAAGTAAGTTGCATGAGCAGGTGGCTCAGACTCCCATGGCNCCTACTCCTGCTGCATTGCCTCCTCTCCCTCAACCCGCACCTATGGCCTCATGGGGAGTTCCCTATGACCAGTTGACTGAGGAAGAAAAAACTCGGGCCTGGTTTACAGATGGTTCTGCACGATATGCTGGCACCANCCGAAAGTGGACGGCTGCAGCACTACAGCCCCACTCAGGGGTGGCCCTGAAGGACAGTGGTGAAGGGAAATCCTCCCAGTGGGCAGAACTTCGAGCAGTGCACCTGGTTGTCCACTTTGCCTGGAAGGAGAGATGGCCAGAGGTACGGATCTACACTGATTCATGGGCAGTGGCTAACGGTTTGGCTGGATGGTCAGGGACTTGGAAGGAACANGATTGGAAGATTGGTGACAAGGAGGTCTGGGGAAGAGGTATGTGGATGGACCTCTCGGAATGGGCACAGAGTGTGAAGATATTTGTGTCCCATGTGAATGCTCACCAAAGGGCANCCNCNGCAGAGGAGGNTCTCAATAATCAGGTGGACAAGATGACCCGTTCTGTGGATGTCAGTCAGCCTCTTTCCCCAGCCACCCCNGTGCTTGCTCAATGGGCTCATGAACAAAGTGGCCATGGTGGCAGGGATGGAGGCTATGCATGGGCTCAGCAACATGGACTTCCNCTCACCAAGGCTGATCTGGCTACNGCCACTGCTGAGTGCCCAACCTGCCAACAGCAGAGACCAACGCTGAGCCCCCGATATGGCACCATTCCCCGGGGGGACCAGCCAGCCACCTGGTGGCAGGTTGATTACATTGGACCNCTTCCATCATGGAAGGGGCAGCGATTTGTCCTCACTGGAATAGACACTTATTCTGGATATGGATTTGCCTTCCCTGCCCGCAATGCTTCTGCCAGNACCACCATCCGTGGACTTACAGAATGCCTTATTCACCGTCATGGTATTCCACACAGCATTGCTTCTGACCAAGGAACTCATTTTACAGCAAANGAAGTGCGGCAATGGGCTCATGCCCATGGAATTCACTGGTCTTACCACGTNCCCCATCACCCNGAAGCAGCTGGCCTGATAGAACGGTGGAATGGCCTNTTGAAGACTCAGTTACGGCGCCAGCTGGGNGACAACACCTTGNAGGGCTGGGGTNNTGTCCTNCAGGATGCGGTATATGCTCTGAATCAGCGACCAATATATGGTGCTGTTTCTCCCATAGCCAGAATNCACGGGTCCGGGAATCAAGGGGTGGAAGTGGGAGTGGCTCCTCTCACTATTACNCCTAATGACCCACTNGCAAAATTTTTGCTTCCCGTCCCCGCAACTTTGGGCTCTGCTGGTTTAGAGGTCTTAGTTCCCAAGGGAGGAATGCTTCCACCAGGGGACACAACAATGGTTCCATTGAACTGGAAGCTGAGACTGCCACCTGGCCACTTTGGGCTCCTCATGCCACTGAACCAACAGGCAAAGAAGGGAGTTACTGTACTGGCTGGGGTGATTGATCCTGATTATCAAGGGGAAATTGGGTTGCTGCTACACAATGGGGGCAAGGAGGANTATGTCTGGAATNCAGGAGATCCTCTGGGGCGCCTCTTAGTACTCCCATGTCCNGTGATAAAAGTTAATGGAAAACTACAGCAACCCAATANAGGCAGGACCGCTAANGGCTCAGACCCTTCAGGAATGAAGGTTTGGGTCACCCCACCAGGCAAAGAACCACGACCAGCTGAGGTGCTNGCTGAGGGCAAAGGGAATATGGAATGGGTAGTGGAAGAAGGAAGTTATAAATACCAGCTACGACCNCGTGACCAGTTGCAGAAACGAGGACTGTAGTAGTTATGNGTATTTCTTCCTTGCTTTGATATGAATATATTTGTGATATATATATTAACNAATATCTTTNTTTTCTTTCCTCTCTCATTCCCCTACTATCTAACATAAGATGTGTTAATAGTAGTTAACCTTATATCTCAGTATTTAAGTTACAGGATATCAAAGGGGGANTGTGACTCAGCTAGAAGAGNAATGAACATCACCCAGAGATGGATAAAGTGACNTNTGGGACTTTGTATCCTCTTTTGGGGAGAGGGTTAGCGTGTTTTCGGTTGTACGAGGGATAGTTGCATCATGTTAGGCGGAAGCATGATTTTGCTATTGTCTTTATTTGGAAGTTAAATATGGTTNAAAGAGGTGTGTATGGATGCCGAGTTGACAAGGGGTGGAC
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERVL-E | ZSCAN16 | 2566 | 2583 | - | -16.47 | GAGAGTTGACATAGCCCT |
| ERVL-E | BCL6B | 1905 | 1921 | - | -17.49 | GGGTCTCCAGGAATTAG |
| ERVL-E | DAL81 | 3562 | 3580 | + | -39.70 | AAAAAACTCGGGCCTGGTT |
| ERVL-E | BPC5 | 3740 | 3769 | + | -47.17 | GGAGAGATGGCCAGAGGTACGGATCTACAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
