ERV3-16A3_I
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000116 |
|---|---|
| TE superfamily | ERV3 |
| TE class | LTR |
| Species | Theria_mammals |
| Length | 5226 |
| Kimura value | 31.08 |
| Tau index | 0.8928 |
| Description | Internal region of an ERVL endogenous retrovirus, ERV3-16A3_I subfamily |
| Comment | Reconstructed from the human genome, but it's shared by all placental mammals. |
| Sequence |
CATGAGTGGTACCGGGAGTGGTCCGNAGAAAACAGGCGGTAAGATGGGGTTTTGGGACTGGCTCACTCACCGCCCGGCGGACAGAGGATACCATCCTGGCACAAGGTGGCGGCCCAGTTGCTAAAGATTTCACCGGTGGTGACCTGGGAAAATGTGTCCCAGNNNTTGGAAGGGGAATGCCCTTGCAGGTGCAATGATTCAGGCATTTGAAAGATATGGGGAGANAATGCCTACAAGGACAGCGGAGTTGGCTGGTTATTGCTAAGTTGTATTGATGCCCTGCAGAGGGATAATGAGAAACTGAGGGCNGTTAACAAGCAGTTAAAGGCTAAGTGTGAGAGCCAGAGGGCCTCTTTGNTGGTAGCTTACAAAGAGGCCCTTATCTCCTGCAGTGGAAGAGCAGACANAGCTGAGGAGCAGACTCAGGATCTAATAGTTAGAGTCGCAGAGCTCCAGAGACGTTTGAATGCTCAGCCAAGGCGAGGTCTGTTATGCTAAAGNTAAGGCCCTTGGTTGGGAAAACCTGGGACGGAACACGGGATGGGGACATCTGGGTGGATGCCCCCGAAGATNTTGGCTCTCCAGACTCCTCTGAACCCTCNGAGCCTGCAGAAGTGGCCCACCCCTCCCTANTAAGAGCTAGCACTCCTCTTGCGCCCGCGCTGGAAGACGNTGCAGAGGCCTCTCCCCGCAAGGCAACAGGTGCCCCCTCTCAGGANCTGCCCCCACCTCCCCTCCTGGCCGCCAGGCCGATAACTAGGGTTAAGTCNCAGCATAACCCGGCTGGGGACGTGCTGGGCCTGATAAGGGAGGAAAGGGACTATACCCCAAAGGAGCTGCAAGAATTAGCCAGCATGTACCGGCAGGAGCCAGGGGAGTATACNCNTGGGACTGGATTTTGAGGGTGCTTGATCAAGGGGGCCGGAATATAAGCGGTAAGACTGGATAANGGAAGAATTTATTGACTTGGGAGCACTTTCTCGGGATACAGGATTTAACACCCTGGCAAGGACCCCAGGAGATGGTGCAAACTCGCTGCTAGGATGGCTCCTAGAAGCGAGAAAAATGGCCCACGCTGAGCGAAGTNGAAATGCCNGAATTGCCNTGGCAGACGGTAGAGGAAGGGATTAAAGGCTCAGGGAAGTGGGCATGCTGGAATGGATATNATTATGTAAGGCCGGAAGACCCACCAGANGATTATGTTCCACGGGAGGGCCCACACCATTCACCAAGGCCATNAGGAATGCGCTGGTGAGAGGGGCACCAGCANNTCACTAAGAAGTTCAGTGGTGGCTCTCCTCTGCAGGCCAGGGCTGACGGTAGGAGAGGCCGTTACAGAACTGGGCTCGCTGATAGCAATGGGGATGATAGGACCCCGAAACAATAGAGGCCAGGTGGCGGCGCTTAACCGCCAGAAGCCAGGNGGNCGCAATTATCGTAATGACCGGAAGGTCGGAGTGGCAGCCAAGGGGGCCTGACCCAAGAGAGTTGTGGAGATGGTTAATAGAACACGGCGTCCCTAGGGGCAAAATAGATNGACAAGGGTGCTGCTTAACTTGTAACAGCAGAAAAAATCTGGGAGGCTGAGGGCGGTCGCCCCAATAAAAAAGTCACGATCCCTTGCCCAGTTTCCGGACCTGAGCCAGTTTTCAGACCCGGAACCCATTGACTGAAGAGGNGGCCGGGTCCCCAGGAGGAAGGACACTGCAATGATTCTTCTCNTTCCTCCCGNAGGGACCTATGGCCATTTACTCGGGTAACTGTACACTGGGGAAAGGGAATACCCAGACATTTCGAGGACTGTTGGACACAGGGTCTGAGTTGACATTGATACCCGGAGACCCGAAGCGTCATCATGGCCCCCTGTTAGAGTGGGGGCATATGGGGGCCAGGTAATAAATGGAGTCCTGGCCAAGGTCCGGCTCACAGTGGGTCCACTGGGTCCANGAACCCAGTGGTCATTTCCCCGGTCCCCGAATGTATAATTGGGTAGTTGGAGTAACCCCCACATTGGNTCCTTGGCCTGTGGGGTAAGAGCTATCATAGTGGGGAAGGCCAAGTGGAAGCCTCTGAAACTGCCCNCCNCCNCCATTCCTAGCCAAGATAGTAAATTATTATATCCTCTCGAGGAAGTGGCGGATGCAGATTAGTGCCACCNTTAAAGACCTAAAGGATGCAGGGGTGGTGGTCCCCATCATATCTCCATTTAATTCACCAGTCTGGCCCCTGCAGAAACCGGATGGATCCTGGAGAATGACNGTAGACTACCGCAAACTCAACCAAGTAGTAGCCCCGATTGCAGCTGCTGTGCCAGATGTGGTATCTTTGCTAGAGCAGATTAACACGGCCTCAGGTACATGGTATGCGGCCATTGATTTGGCGAATGCGTTCTTTTCCATTCCNATCAGAAAAGAGGATCAGAAACATTCACATGAACAGGAAANAATATACATTTACAGTTTTGCCCCAGGGCTATGTTATCTTCTCCTCTGTCATAATAAGTCCGAAGAGATCTGGACCGTCTGGACATCCCGCAGAACATCACATTGATCCATTACATCGATGACATCATGCTGATCGGACNGGATGAGCAAGAGGTGGCTACGTTAGGCCTTGGTAAGACACATGCGCTGAGGGTGGAGATAACCCTACGAAGATTCAGCGNNNGGACCTGCCACNTCAGTAAAGTTTTTAGGGGTCCAGTGGTCNGGGGCATGCCGGGACATCCCCTCCAAAGTAAAAGACAAATTGTTGCATCTTGCATCTCCTACCACGAAGAAGGAAGCACAACGCCTGGTAGGCCTCTTTGGGTTCTGGAGGCAGCATATTCCACACCTGGGAATACTGCTCCGGCCCATNTACCGGGTGACACGGAAGGCTGCCAGCTTTGAGTGGGCCCAGAGCAGGAAAGGGCTCTGCAGCAGGTCCAGGCTGCGGTGCAAGCAGCCCTGCCGCTTGGGCCATACGACCCGGCAGACCCTATGGTGTTGGAGGTGTCAGTGGTGGGAAAAGATGCNGTGTGGAGTTTATGGCAAGCCCCAGTGGGAGAATCACAACGCAGGCCCCTGGGGTTCTGGAGCAAGGCTGCAAGTCTTTTGAAAAACAGCTCTTNNNATGCTACTGGTAGAGANGGAACGCTTACCATGGGACACCAAGTGACACGNANCAAAATGTACCCCGTCATGAGCTGGGTTCTGTCGGACCCACCAAGTCATAAGGTCGGGCGGGCCCAGCAGCAATCCATCGTAAGATGGAAGTGGTACATCCGGGATCGAGCACGAGGAGGACCACAAGTAAGCTGCATGAGCAGGTAGCCCAGACCCCCATGTCACCCACCACNGTTGCACCAGCGCTCCTTCAGCTCACACCTATGGCCGTATGGAGNAGAGGTGTGNTCCTGATCGACCAGCTGAAGGAGGAGGAAAAANGCCCGAGCTTGGTTCACGGATGGGTCGGCTCGGTATGTGGGTGCAAGCCGAAAATGGACGGCGGCTTGCACTACAGCCNCACTCAGGGGTGGCCTTGAAAGACAGTGGNGAGGGAAAATCTTCCCAATGGGCAGAGCTTCGGGCGGTGCACCTGGTCATCCACTTTGTGTGGAAGGAGAAGTGGCCCGAGGTNAGAATATATACGGACTCATGGGCAGTGGCGAATGGCTTGGCCGGCTGGTCAGGGGCCTGGAAGGAGAAAGATTGGAAGATCGGAGACAAGGAGGTCTGGGGANTAGAGGCATGTGGATGGACNTATGGGAGTGGGCACGAAGTGTGAAGATCTTTGTATCACATGTTAACGCCCACCAGAGAGCATCCACCACGGAAGAGGCACTAAACAACCAAGTAGACAAAATGACTCGGCCAGTTGACGTCAGCCAGCCTCTGTCATCGGCCACCCCANGTGCTGGCACAATGGGCACATGAACGGAGTGGCCACGGTGGCAGAGATGGAGGCTACGCATGGGCCCAACAGCATGGACTCCCACTCACCAAGGCTGATCTAGCTACTTGCTGCCNCNNCTGAATGTCCAACCTGCCAGCAACAGAGACCGATCCCCGATATGGCACCATTCCTCGAGGAGACCAACCAGCCACTTGGTGGCAAGTTGACTACATTGGGCCCCTTCCATCCTGGAAGGGNCAGCGGTTCATCCTNACAGGAATACATATTCCGGGTATGGGTTTGCCTTTCCTGCCCGCAGGGCCTCAGCCAGCACCACTATCCGAGGGCTTACGGAGTGCCTGATCCACNGGCATGGGATCCCACACAACATNGCATCNGACCAGGGACCCACTTTACAGCAAAGGAGGTGCGGGAGTGGGCCCATGACCATGGGATCCACTGGTCNTATCACATACCGCACCATCCAGAAGCTGCCGGCCTGATAGAGCGNTGGAACGGCCTNCTGAAGGCACAGCTGAAGCGCCAGCTCGGAGACGATACTCTGCGAGGATGGGGCGCCATCCTTCAGGATGCAGTGTCCCCAATAGGAAGAATACATGGGTCCGGGAACCAAGGGGTGGAAGCAGGAGTGTNGCCCCACTTACCATCACTCCCAGTGACCCACTGGGGGANTTTGTGCTTCCCGTCCCCGCAACTCTGGGCTCTGCAGGNTTAGAGGTCCTGGTCCCCAAAGGGGGNACGCTCTCGCCAGGGGACACAGCGTCCCATTGAACTNTANAGCTACGGCTGCCGCCTGGGCACTTTGGGCTCCTTGTGTCCAGGGACCAGCAGGCAAGAAGAGGAGTCACCATCTTGGCAGGGGTAATTGACCCTGATCATCAGGAGGAGGTAGGGCTGCTNTTACACAATGGGGGCAGGGAGGAATACGTNTGGAACCCAGGTGATCCACTTGGGCGCCTCTTGGTACTCCCTTGCCCAATTNTGACTGTAAATGGACAAGTGCAGCAACCCCGGCCTGAGAAGGGCATGGTNACCAGGGGCTCAGACCCCTCAGGAATGAGGGTCTGGGTCACGCCACCAGGTAAGCCACCGAGACCAGCAGAGTGNTAGCTGAGGGTGAGGGGAATCTAGAATGGATAGTGGAGGAGGGAGACGATGAGTATCAGTTGCGGCCCCGAGACCAACTGAGCGACGGGGGCTGTAGTTCGTCCCACTAACCTCCCTCTTCTAAGTTTCCCTCAGGAAGAGAGGCCCACNGGAATCCTGGAGGAGCTGCTCCTGAACCGAACGTGTATGGAGAAGTGGATCCGNGCGGCGCAAGGGGTGGAC
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV3-16A3_I | ZNF213 | 4685 | 4696 | - | 17.73 | GCCCAGGCGGCA |
| ERV3-16A3_I | IDD4 | 2736 | 2750 | + | 17.70 | AGTAAAAGACAAATT |
| ERV3-16A3_I | GAF1 | 2735 | 2749 | + | 17.65 | AAGTAAAAGACAAAT |
| ERV3-16A3_I | SCRT2 | 696 | 705 | + | 17.62 | GCAACAGGTG |
| ERV3-16A3_I | IDD5 | 2736 | 2749 | - | 17.47 | ATTTGTCTTTTACT |
| ERV3-16A3_I | ZmbZIP57 | 2563 | 2572 | - | 17.44 | ATGATGTCAT |
| ERV3-16A3_I | ZmbZIP25 | 2562 | 2571 | + | 17.39 | GATGACATCA |
| ERV3-16A3_I | ZmbZIP72 | 2562 | 2571 | + | 17.37 | GATGACATCA |
| ERV3-16A3_I | SREBP | 4966 | 4975 | + | 17.33 | GTCACGCCAC |
| ERV3-16A3_I | ZNF75A | 3002 | 3013 | - | 17.14 | TCTTTTCCCACC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
