ERV24_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000115 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7575 |
| Kimura value | 22.49 |
| Tau index | 0.8850 |
| Description | ERV1 retrotransposon, ERV24_Prim subfamily |
| Comment | Endogenous element with LTR24 LTRs. ORFs: (roughly) gag 899-2224, pol 2228-5926, env 5961-7358. Pol product 78% similar to that of PRIMA4 and 69% similar to that of ERV8_MD. Env is 85% similar to that of PRIMA4. |
| Sequence |
TTTTGGCGACCNNGANGGGACCCGAAGCGGACCTCCAGTGATCCCCGTCACTTCGCCGACAGCCGGAGCCTTGGTACCAGCACGAACGACTTTCGTTCACCCGACCTCGCCGGAGTCAGCGGGGATCTCTGGTAAGGCCCCTCTCGGGNTCCGAATCCTCCCGGCTTTGGTTGAGGATTCAGACTTTATTCGAGCTACACACATTCCTAACTCGACGGGGTTGGAATTGAAGCTCTACTGCAAGGTAGGAGTTTCATTTGTTATTCTCTAGAGATTCTGCTGATCGCAGATTTGTGATTTTCACTTTTCTCTGAGGTTAAGGTTTTGTTTGGAATTACTCNTTAGAGTTTTTACAACCTTTTCTCTCATTCGAAATTTTGGTCAGGGAGAAAACAGTTTCTCTCTGAAAAGAGGAAGTGAATCTTTGTGGCTTAAGCAAAAATTTGTAATCTTTAAAACTGGCCAGATTCTGAAGCTCGGTTCAATTGACAAATCTAAACTTTCTTCTTGAGTGACCAAAATTATAAAAGGCTCTCTATGAGGACGAGATAAGTCCCGAAGATAAGAGACACTGCTCCTCCCGGCCGAAAGGCGCCTTAGGTGACTAAGGTCTTGCGGGGGTGTCGGAGTTTATCGCCCATGATGTGNAGCGGCCTCACAGGGNATCCCTTAAGAAGAACATNCAGGGANCCTTGCTTAATCCGGNGGGCGCACATAAAGGNTTGGTCACCCGGCGCCTTAAGCACCCAAGTCTCTTGGGATCACCGAGACACGTAAGAGGGAAGAACCGACTCANGGGTGACACCTTGAGGAGCGACGCCCACAAGCAGCACACTCGACCCAAAACACNTCCCACTAGGTCTTTGGTCATTCAAAAGGAAAGTCTAAATTATGGGNAATCGNGCTTCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCNTTAGAAACACCAGCTGGATTTATGTNTAACACTTATGGCGCCTCTTCNTGCAAATATCTAGGAAAATGGNCCCACNTAACTCGGGATGACCCCAAACTACAATGGCCAAAATGGGGNNCCTTTGAAATGCCTAAANTAATTTATTTGCGCGCNCAATTGGAAAAAGCTGGCTTTAGAATNAGACAAANTGAATGGGAGANCTACTTTCAATGGTACCTAGAAGCTTCTAAAAGAGGTTCTGANAAAGTCGCTTCCTTGCAGGAGGNAAACAAAAGATTGTCTGAAACNATTTCTGAATTGAAAAAGACTGCNGAAGTTTCTCCTCCTTCTCCAGCTCCTCCTTCTCTTTTGTCAGAACTTCCTTGTCTGGACTTACCTCCTCTTCCTCCTCCTCCTCCTTCTTCTGCTGTTCTGGCTCCATTTCGGGAATACCCTGTGTCCGGTAGAGGAGAACCTGCCTTGGTTTATCAACCATGGTCAAAAGTAGAACTTAAAGGCATAATTAAAGAATTCCCNGATCCTCTCCAAGATCCTATTGGATTTGCTAGAGAATTCGANTTAANCGTTCAAACTTATGANCCCGGATNTTCTGATCTNTATCAATTGATTCACATGTTGGTGTNAGAAAGCAAAGCCAANGANTGGNTAGNAAAGGCAAATTGGAANAATCCTTTAGAGGACTTTCANAAATNNNCTGAAGCAGATCGTGAANGGGCCCGCANTNCTGCCAAAGCTTTNCNNGATGCTATCCCCCNAGTTTTCCAAAAAGTAGTTGATTGGAACAAAATNCAGCAATGCCGACAAAATCTTGATGAGCCTGTAATGTCATACTATGAAAGATTTGAAAAAACGTTTAAACAATATTCAGGCCTATCAGAAGAAAGTTATGCTAACCACCAAAATGATACTCTCCTTAACTCAAACTTTATAAATGGATTAGATGAAGAATTGGCAATTATAATAAAGAGACAACGCCCCAGTTGGGCTACCTCTCAAACTCATGATCTAGTTAATTTTGCCGATCAAATGTCCCGTACCCTAACCAAGGAAGAAAAGGAAAGGAAAGTTAAACAGAAAGGAAAAGCAAATAAGATCATGAGTTTACAACTAAAACAATTGTCCAACCAATTTGTAACCCCTAAACGGCCTAATAAGTTCCAAAACCGACCCAATCCCCCGCTTTGCAATTACTGCAAAAAGCCTGGACATTTCAAAAAGGATTGTAGAAAATTAAAATGGAAAGAACAGCAACAGGCCAAAGAAAAAGAAGAATAGGGATGCTCCGAGGAAATCAAAGGGACTTTCCCCTTTCTCCTNACTAATGCCTTAGGAGAAATNGAAATTAATTTAAATGGAGAACANACACGAGCCCTTATTGACACTGGAGCTACGTTNTCAGTNNTNAACCCCACCTTATTACAAGGTCCCNTTCCTCGGAGTAAAAAAACAATACAAATGGTGGGNGTAACAAATACTCCTATANCAGCATATAAATCTCAACCTNTAGTTTTTCAGTTAGGNCCCCTACAGGGAACNCATGTTTTCCTCTTGGTTCCCTCGGCCCCCATNCATCTNNTAGGNAGAGACTTTTTGGAATTNCACAATGCNCACATTTCCTTCTCTCAAAAGGGGGAAATGTATTTAGAATTAGAAGATAAAATAGAATTATTAGGTTCGAAAATTTTTTCAAAATCTGATNCTTTTAATTCACAAATTGCAATTCATATTGCCATGGAGGAAACTAAATTGTTAAATAATGAAGAATTACAAGAGCTGTTAAAAATAGTACCTGATCANTTGTGGNCAAAATCTTCCACTGATATTGGGAAAATTATCTCGGCNGCCCCNATTAAAATTCAAATAGATCCATCNAAACCTCTNCCNAACCTTAANCAATACCCTCTAAGACCAGAGGCCTCGGAAGGGATNAGACCTATAATTTNGGATTATATAAAAAGAGGCTTNATTATTCCTTGCACNAGCCCNTGTAACACTCCAATCCTNCCNGTNAGAAAACCAAATGGNNGAGGATGGAGATTTGTNCAGGATCTNAGAGCNATTAATAANATNGTNATNCCTCGACNTCCNGTAGTACCAAACCCNNATACNTTGTTGACTGCCATCCCAACTGAAGGTGAGTTCTTCACTGTAATAGACCTNTGCNGTGCNTTCTTTAGCATTCCTGTNGATAAAGANAGTCAATNTCTNTTTGCCTTCACTTGGGAAGACAGACAATACACCTGGACNGTNATGCCTCAGGGGTNTACTGAGAGCCCNACTTATTTTTCNCAAATATTAAAAGCAGACCTNTCGGATGTCGANTTCCCTNAGAANTCCACCTTGATNCAGTATGTAGATGATTTACTTCTCTGCTCANNGGATAAGCAAGCCTCCANAGAGGACGGAATTCACCTNTTACAACAATTAGCTTCAAAGGGACACAAGGTTTCAAAAGAAAAACTTCAGTTCTGTCAAAAACAAGTNAAATATTTAGGNCACCTAATNTCAAAGGAAGGCCTTTTTATCAATCCGGANAGAATAAAAGGAATATTGGCCTTCCCTANCCCNAAAACTAAGAAACAACTGAGAGGATTTCTGGGATTGGCAGGATACTGCAGANATTGGATTCCAAACTTCTCCTTAANAGCTCAACCTTTATATACTCTCTTAAAACAAGATAAGCCAGACCCCCTGGAATGGACAGAGGAAAATCAGTTAACATCGGAAGAAATTAAAAAGAGTCTTACAGATGCCCCAGCNTTAGGACATCCAAATTATANTATTCCNTTTTCNTTGTTCGTTCATGAAAATCAGGGAAATGCCTTAGGNGTTCTNACTCAAAAACATGGNGATCAAAATAGACCCGTNGGATACTATAGTCAGCAACTGGACCCNGTGGCTAAAGGATTGCCACCTTGCNTGAGAGCAGTAACNGCNACNGCCNTGTTAGTAAAAGCNACCGAAGAAATAGTNATGGGATCTCCCCTCACCGTCTNTGTTCCACATTCTGTGGAAGCNCTTCTAAACTCGCACCACACTCAACATTNTTCGGTTAGTAGACTNACTTCTTATGAAGTTCTTCTNCTTTCTGCTCCCCATATTACNATCTCCAGATGTAATAATCTNAACCCTGCCACTCTTCTGCCCCTGCCTTCAGATGAAACGCCACATGATTGCATAATCTTAACCGACCAGCTTCTCTCTCCTAGGANGGACCTACAAGAAACTCCCCTTACTAACGCTGATGTTATTTGGTTTACGGATGGNTCTTACTTAAAGGACGAATCTGGAANTTATCGGGCAGGNTATGCTATAGCATCTTTAACTGAGGNAATAGAAAGCGCTCNTCTTCCAGGAGCNANNTCGGCCCAACAGGCAGAGTTAATNGCNCTNACTNGAGCCTGTCAATTGGCNAAAGGAANAACTGCTAATATTTATACAGATAGCAGATATGCTTTCGGAGTAGCTCATGATTTTGGNATGCTATGGAAACAAAGAGGATTTCTNACCTCTTCCGGTCAGCCCATAAAAAATGGACACCNTGTTTCAGAATTACTGGAAGCCATACTATTGCCAAAATCATTAGCCATTATCAAAATTCCNGGCCATTCAAAGNCAGACACTNCAGAAAGCAAAGGAAATCANTTAGCNGATANTACAGCAAAAAGNGCTGCCCTAAATGTATCTGAACAAGAAAATCAACCCATTTTAGCTTTTAAGGAAGCACTTGATTTTGATATAAAATTAGCTCAATCCAAAGCTCCAAAAACAGAACAAGAAAATTGGGAAACAAAAGGGGGAACGTACTCCTCCGAGACTGGGCTATGGTATGGACCAAACGGTCTACCCATACTTCCAACCAAATTACAGTCGTCTTTCTTAACTTATGTNCATGATTTAACTCATTGGAGCCCCGANAAAATGATTGCTTGGGGAAAACAATACTATTGGAAACCTTCTCCAACTGTTGCTCANAAGGTATACAATCGCTGCCATATCTGCCCAAAACATAATCCNGGGAAACCTTTACATAGTTCTCAAGGTCATTTTCCTTTACCAGAAGGCCCTTTCGAGGTATGGCAANTGGATTTTATTCAGCTGCCGCCATCNCAAGGATACGAGTATGTTCTNGTNATGGTTTGTATGTTTTCTCATTGGGTAGAAGCATTTCCNTGCAGAAGAGCNACGGCCTTAGCAGTAGGTAAAATTCTNTTAGAAAAAATTATTCCNNCTTGGGGAGTTCCTCTAGAACTCCACAGCGACNGAGGNACTCATTTTACTGGACAAGTAATNCAGTCAGTNTGTAAAATCTGGCCCATTCTNCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGACTGGTGGAACGNACAAATGGAATAATNAAAACTCAATTGGCAAAGTTNACNGAAGCTTTTAAANTTCCTTGGCCAAAGGCTCTTCCATTGGTNTTGCTTAACCTAAGATCNACCCCNTTTGGAAAACACCAGCTNTCTCCNTTTGAAATNATAACAGGNAGGCCTATGAANCTGNCTCCAGGAANTTNTGAACCTACGNTATTAAAAGGNGATATNCTNCATTATTGCNANGGCCTTATAAGGCANCTAACTAAAAACTNTAANTTAGTAAAAGANTCTTTCCACAGCGAGCTCCCGGGAGACGAAGANCTCAAAGATCACGGNCTCCAACCNGGAGATTTTGTCTATTGGAAACGACATCNANTAAAGGACTCCCTCCAACCNCGNTGGAAGGGNCCTTATCAGGTGCTNTTAACCAATCCTTGTGCTGCTAAGCTAAAGGGNATTGACTCCTGGATACACGTNNCTCATCTAAAGAAAGCCGCTTTGCCAATTTGGACTTCATCTCAAACCGGTGATCTAAAATTGAAATTCTCCAGAACCAACAAGGATGAGAAAAAGACGACATCCGAGGTAGACAGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAACGAACGCTTAATATTAATAATCGTTAATAGATGGAGAAGGTCTTCCTTTGCAAGTTCCCACTAAATTTCTTTCTTTTCGTCCCTAGTTCTTATGTTTTGTCGCTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTCTTGCAATGGGCTCAAGACTATGCTAACGGATTACAGAAAAACACTTGTTGGGTATGCGGCCTCATGCCCCTTTCCGGTGGTTCTGGCCTACCGTGGTGGGTATCTCCTTTCCAAGGACGAGATTGGATAGAATATCAGAAATATATCNGTGTTTCTCAAGAACAGTCATCGGTGCTTAACACTAGTATGACTAAGGATGACGTACATCACTGGCCTATTAATAATACTTTACAAAGCAAAGGACATGGGAAGAGCTTTTCGGTAAANGAAACCAGTTCGTTAGCTTTAACGCTGGCGCTGCCCCAACTGAGAGATAAGACAACTCGATTTCGGGATGGTATAACACAAATTTGGGACGGTTTTATCTGGCTTACCCCCTCTTTTGGTCAGCTTAGTCAGCTTGCCCCTTTATGTTGGGAACAAAAGAATCACACCAAAGATACATGGCCCAATAGCACTAGAGATATGGGATGGATACCCAAGGAACAGTGTATCCACACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATGGGCACAGCGACCGGGTATTTATTGGCTAGCTCCAAATGGAACGTCTTGGCTGTGCGGCACCAATCTATGGCCNTGGTTACCCCCAGGATGGTTAGGACGGTGTTCTTTGGGTTATGCCTGGGCACAAGGTCGAATAGTTCATACCCTTTCAAAGCCTGCAAATCTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTATTCCATTGGTATGATCATTTAGCTTCCATCTTTCTGCCACAACTGGGTATTGAGGATGTCATTTGGCATGTAGAGGCCCTAACCAATTACACANAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAACAATGAAGTTGCTCTTATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCNATCATAAAAACTGAGTGTTGTGTCTATATCCCAGATGAATCAGATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACTAACCTTTCAGATCCAACACCCTCTCTAAACGATTGGCTAAGCAGCTGGTTTGGATCTTGGGGAACCTGGTGGCAGAAGCTGTTACTTATTCTAGGAATTATAATCATTTGTTGCGTTTTGTCCTGTTTTTGTCTTTACTGCTGCTGCGGCATTTGTTTGCAATGGAGTCAACGCACAACTGAAAAAACTAAAATAATGGTCGCTCAAAGAATTGCATTAATTGAAGATGCAGCCGTGTAGCCTGACTCAGGTCACAAAGTCACTTCCTTCATGTTGCTTTAAATTCGGCCTATACCCCATCAGCTTTATAGCCTGACAAATTCCCCCTGCCGTGGGACATGACNCTCTAGGAATGAGCCTTCCTAGCGACGCGGGACTAAGCTCCTGAACATAAAAGGAGCCAAAACATTTGAGTTCATCTACGATGCTTTCTTCGAAAGATCTTGATGAAAAGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24_Prim | ETV5::DRGX | 3668 | 3679 | + | 15.80 | CGGAAGAAATTA |
| ERV24_Prim | MSC | 6034 | 6043 | + | 15.77 | ACCAGCTGTT |
| ERV24_Prim | THRB | 7352 | 7368 | + | 15.76 | TAGCCTGACTCAGGTCA |
| ERV24_Prim | Spi1 | 1324 | 1336 | - | 15.66 | GAGGAGGAAGAGG |
| ERV24_Prim | ZFP14 | 2856 | 2870 | + | 15.65 | AGAGGCCTCGGAAGG |
| ERV24_Prim | BAS1 | 108 | 119 | + | 15.58 | CGCCGGAGTCAG |
| ERV24_Prim | HDG1 | 7328 | 7337 | - | 15.57 | CAATTAATGC |
| ERV24_Prim | IDD7 | 7230 | 7243 | - | 15.55 | AAAACAGGACAAAA |
| ERV24_Prim | Prdm5 | 2295 | 2305 | - | 15.52 | GTTCTCCATTT |
| ERV24_Prim | HDG7 | 7328 | 7337 | + | 15.52 | GCATTAATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
