ERV24_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000115 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7575 |
| Kimura value | 22.49 |
| Tau index | 0.8850 |
| Description | ERV1 retrotransposon, ERV24_Prim subfamily |
| Comment | Endogenous element with LTR24 LTRs. ORFs: (roughly) gag 899-2224, pol 2228-5926, env 5961-7358. Pol product 78% similar to that of PRIMA4 and 69% similar to that of ERV8_MD. Env is 85% similar to that of PRIMA4. |
| Sequence |
TTTTGGCGACCNNGANGGGACCCGAAGCGGACCTCCAGTGATCCCCGTCACTTCGCCGACAGCCGGAGCCTTGGTACCAGCACGAACGACTTTCGTTCACCCGACCTCGCCGGAGTCAGCGGGGATCTCTGGTAAGGCCCCTCTCGGGNTCCGAATCCTCCCGGCTTTGGTTGAGGATTCAGACTTTATTCGAGCTACACACATTCCTAACTCGACGGGGTTGGAATTGAAGCTCTACTGCAAGGTAGGAGTTTCATTTGTTATTCTCTAGAGATTCTGCTGATCGCAGATTTGTGATTTTCACTTTTCTCTGAGGTTAAGGTTTTGTTTGGAATTACTCNTTAGAGTTTTTACAACCTTTTCTCTCATTCGAAATTTTGGTCAGGGAGAAAACAGTTTCTCTCTGAAAAGAGGAAGTGAATCTTTGTGGCTTAAGCAAAAATTTGTAATCTTTAAAACTGGCCAGATTCTGAAGCTCGGTTCAATTGACAAATCTAAACTTTCTTCTTGAGTGACCAAAATTATAAAAGGCTCTCTATGAGGACGAGATAAGTCCCGAAGATAAGAGACACTGCTCCTCCCGGCCGAAAGGCGCCTTAGGTGACTAAGGTCTTGCGGGGGTGTCGGAGTTTATCGCCCATGATGTGNAGCGGCCTCACAGGGNATCCCTTAAGAAGAACATNCAGGGANCCTTGCTTAATCCGGNGGGCGCACATAAAGGNTTGGTCACCCGGCGCCTTAAGCACCCAAGTCTCTTGGGATCACCGAGACACGTAAGAGGGAAGAACCGACTCANGGGTGACACCTTGAGGAGCGACGCCCACAAGCAGCACACTCGACCCAAAACACNTCCCACTAGGTCTTTGGTCATTCAAAAGGAAAGTCTAAATTATGGGNAATCGNGCTTCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCNTTAGAAACACCAGCTGGATTTATGTNTAACACTTATGGCGCCTCTTCNTGCAAATATCTAGGAAAATGGNCCCACNTAACTCGGGATGACCCCAAACTACAATGGCCAAAATGGGGNNCCTTTGAAATGCCTAAANTAATTTATTTGCGCGCNCAATTGGAAAAAGCTGGCTTTAGAATNAGACAAANTGAATGGGAGANCTACTTTCAATGGTACCTAGAAGCTTCTAAAAGAGGTTCTGANAAAGTCGCTTCCTTGCAGGAGGNAAACAAAAGATTGTCTGAAACNATTTCTGAATTGAAAAAGACTGCNGAAGTTTCTCCTCCTTCTCCAGCTCCTCCTTCTCTTTTGTCAGAACTTCCTTGTCTGGACTTACCTCCTCTTCCTCCTCCTCCTCCTTCTTCTGCTGTTCTGGCTCCATTTCGGGAATACCCTGTGTCCGGTAGAGGAGAACCTGCCTTGGTTTATCAACCATGGTCAAAAGTAGAACTTAAAGGCATAATTAAAGAATTCCCNGATCCTCTCCAAGATCCTATTGGATTTGCTAGAGAATTCGANTTAANCGTTCAAACTTATGANCCCGGATNTTCTGATCTNTATCAATTGATTCACATGTTGGTGTNAGAAAGCAAAGCCAANGANTGGNTAGNAAAGGCAAATTGGAANAATCCTTTAGAGGACTTTCANAAATNNNCTGAAGCAGATCGTGAANGGGCCCGCANTNCTGCCAAAGCTTTNCNNGATGCTATCCCCCNAGTTTTCCAAAAAGTAGTTGATTGGAACAAAATNCAGCAATGCCGACAAAATCTTGATGAGCCTGTAATGTCATACTATGAAAGATTTGAAAAAACGTTTAAACAATATTCAGGCCTATCAGAAGAAAGTTATGCTAACCACCAAAATGATACTCTCCTTAACTCAAACTTTATAAATGGATTAGATGAAGAATTGGCAATTATAATAAAGAGACAACGCCCCAGTTGGGCTACCTCTCAAACTCATGATCTAGTTAATTTTGCCGATCAAATGTCCCGTACCCTAACCAAGGAAGAAAAGGAAAGGAAAGTTAAACAGAAAGGAAAAGCAAATAAGATCATGAGTTTACAACTAAAACAATTGTCCAACCAATTTGTAACCCCTAAACGGCCTAATAAGTTCCAAAACCGACCCAATCCCCCGCTTTGCAATTACTGCAAAAAGCCTGGACATTTCAAAAAGGATTGTAGAAAATTAAAATGGAAAGAACAGCAACAGGCCAAAGAAAAAGAAGAATAGGGATGCTCCGAGGAAATCAAAGGGACTTTCCCCTTTCTCCTNACTAATGCCTTAGGAGAAATNGAAATTAATTTAAATGGAGAACANACACGAGCCCTTATTGACACTGGAGCTACGTTNTCAGTNNTNAACCCCACCTTATTACAAGGTCCCNTTCCTCGGAGTAAAAAAACAATACAAATGGTGGGNGTAACAAATACTCCTATANCAGCATATAAATCTCAACCTNTAGTTTTTCAGTTAGGNCCCCTACAGGGAACNCATGTTTTCCTCTTGGTTCCCTCGGCCCCCATNCATCTNNTAGGNAGAGACTTTTTGGAATTNCACAATGCNCACATTTCCTTCTCTCAAAAGGGGGAAATGTATTTAGAATTAGAAGATAAAATAGAATTATTAGGTTCGAAAATTTTTTCAAAATCTGATNCTTTTAATTCACAAATTGCAATTCATATTGCCATGGAGGAAACTAAATTGTTAAATAATGAAGAATTACAAGAGCTGTTAAAAATAGTACCTGATCANTTGTGGNCAAAATCTTCCACTGATATTGGGAAAATTATCTCGGCNGCCCCNATTAAAATTCAAATAGATCCATCNAAACCTCTNCCNAACCTTAANCAATACCCTCTAAGACCAGAGGCCTCGGAAGGGATNAGACCTATAATTTNGGATTATATAAAAAGAGGCTTNATTATTCCTTGCACNAGCCCNTGTAACACTCCAATCCTNCCNGTNAGAAAACCAAATGGNNGAGGATGGAGATTTGTNCAGGATCTNAGAGCNATTAATAANATNGTNATNCCTCGACNTCCNGTAGTACCAAACCCNNATACNTTGTTGACTGCCATCCCAACTGAAGGTGAGTTCTTCACTGTAATAGACCTNTGCNGTGCNTTCTTTAGCATTCCTGTNGATAAAGANAGTCAATNTCTNTTTGCCTTCACTTGGGAAGACAGACAATACACCTGGACNGTNATGCCTCAGGGGTNTACTGAGAGCCCNACTTATTTTTCNCAAATATTAAAAGCAGACCTNTCGGATGTCGANTTCCCTNAGAANTCCACCTTGATNCAGTATGTAGATGATTTACTTCTCTGCTCANNGGATAAGCAAGCCTCCANAGAGGACGGAATTCACCTNTTACAACAATTAGCTTCAAAGGGACACAAGGTTTCAAAAGAAAAACTTCAGTTCTGTCAAAAACAAGTNAAATATTTAGGNCACCTAATNTCAAAGGAAGGCCTTTTTATCAATCCGGANAGAATAAAAGGAATATTGGCCTTCCCTANCCCNAAAACTAAGAAACAACTGAGAGGATTTCTGGGATTGGCAGGATACTGCAGANATTGGATTCCAAACTTCTCCTTAANAGCTCAACCTTTATATACTCTCTTAAAACAAGATAAGCCAGACCCCCTGGAATGGACAGAGGAAAATCAGTTAACATCGGAAGAAATTAAAAAGAGTCTTACAGATGCCCCAGCNTTAGGACATCCAAATTATANTATTCCNTTTTCNTTGTTCGTTCATGAAAATCAGGGAAATGCCTTAGGNGTTCTNACTCAAAAACATGGNGATCAAAATAGACCCGTNGGATACTATAGTCAGCAACTGGACCCNGTGGCTAAAGGATTGCCACCTTGCNTGAGAGCAGTAACNGCNACNGCCNTGTTAGTAAAAGCNACCGAAGAAATAGTNATGGGATCTCCCCTCACCGTCTNTGTTCCACATTCTGTGGAAGCNCTTCTAAACTCGCACCACACTCAACATTNTTCGGTTAGTAGACTNACTTCTTATGAAGTTCTTCTNCTTTCTGCTCCCCATATTACNATCTCCAGATGTAATAATCTNAACCCTGCCACTCTTCTGCCCCTGCCTTCAGATGAAACGCCACATGATTGCATAATCTTAACCGACCAGCTTCTCTCTCCTAGGANGGACCTACAAGAAACTCCCCTTACTAACGCTGATGTTATTTGGTTTACGGATGGNTCTTACTTAAAGGACGAATCTGGAANTTATCGGGCAGGNTATGCTATAGCATCTTTAACTGAGGNAATAGAAAGCGCTCNTCTTCCAGGAGCNANNTCGGCCCAACAGGCAGAGTTAATNGCNCTNACTNGAGCCTGTCAATTGGCNAAAGGAANAACTGCTAATATTTATACAGATAGCAGATATGCTTTCGGAGTAGCTCATGATTTTGGNATGCTATGGAAACAAAGAGGATTTCTNACCTCTTCCGGTCAGCCCATAAAAAATGGACACCNTGTTTCAGAATTACTGGAAGCCATACTATTGCCAAAATCATTAGCCATTATCAAAATTCCNGGCCATTCAAAGNCAGACACTNCAGAAAGCAAAGGAAATCANTTAGCNGATANTACAGCAAAAAGNGCTGCCCTAAATGTATCTGAACAAGAAAATCAACCCATTTTAGCTTTTAAGGAAGCACTTGATTTTGATATAAAATTAGCTCAATCCAAAGCTCCAAAAACAGAACAAGAAAATTGGGAAACAAAAGGGGGAACGTACTCCTCCGAGACTGGGCTATGGTATGGACCAAACGGTCTACCCATACTTCCAACCAAATTACAGTCGTCTTTCTTAACTTATGTNCATGATTTAACTCATTGGAGCCCCGANAAAATGATTGCTTGGGGAAAACAATACTATTGGAAACCTTCTCCAACTGTTGCTCANAAGGTATACAATCGCTGCCATATCTGCCCAAAACATAATCCNGGGAAACCTTTACATAGTTCTCAAGGTCATTTTCCTTTACCAGAAGGCCCTTTCGAGGTATGGCAANTGGATTTTATTCAGCTGCCGCCATCNCAAGGATACGAGTATGTTCTNGTNATGGTTTGTATGTTTTCTCATTGGGTAGAAGCATTTCCNTGCAGAAGAGCNACGGCCTTAGCAGTAGGTAAAATTCTNTTAGAAAAAATTATTCCNNCTTGGGGAGTTCCTCTAGAACTCCACAGCGACNGAGGNACTCATTTTACTGGACAAGTAATNCAGTCAGTNTGTAAAATCTGGCCCATTCTNCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGACTGGTGGAACGNACAAATGGAATAATNAAAACTCAATTGGCAAAGTTNACNGAAGCTTTTAAANTTCCTTGGCCAAAGGCTCTTCCATTGGTNTTGCTTAACCTAAGATCNACCCCNTTTGGAAAACACCAGCTNTCTCCNTTTGAAATNATAACAGGNAGGCCTATGAANCTGNCTCCAGGAANTTNTGAACCTACGNTATTAAAAGGNGATATNCTNCATTATTGCNANGGCCTTATAAGGCANCTAACTAAAAACTNTAANTTAGTAAAAGANTCTTTCCACAGCGAGCTCCCGGGAGACGAAGANCTCAAAGATCACGGNCTCCAACCNGGAGATTTTGTCTATTGGAAACGACATCNANTAAAGGACTCCCTCCAACCNCGNTGGAAGGGNCCTTATCAGGTGCTNTTAACCAATCCTTGTGCTGCTAAGCTAAAGGGNATTGACTCCTGGATACACGTNNCTCATCTAAAGAAAGCCGCTTTGCCAATTTGGACTTCATCTCAAACCGGTGATCTAAAATTGAAATTCTCCAGAACCAACAAGGATGAGAAAAAGACGACATCCGAGGTAGACAGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAACGAACGCTTAATATTAATAATCGTTAATAGATGGAGAAGGTCTTCCTTTGCAAGTTCCCACTAAATTTCTTTCTTTTCGTCCCTAGTTCTTATGTTTTGTCGCTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTCTTGCAATGGGCTCAAGACTATGCTAACGGATTACAGAAAAACACTTGTTGGGTATGCGGCCTCATGCCCCTTTCCGGTGGTTCTGGCCTACCGTGGTGGGTATCTCCTTTCCAAGGACGAGATTGGATAGAATATCAGAAATATATCNGTGTTTCTCAAGAACAGTCATCGGTGCTTAACACTAGTATGACTAAGGATGACGTACATCACTGGCCTATTAATAATACTTTACAAAGCAAAGGACATGGGAAGAGCTTTTCGGTAAANGAAACCAGTTCGTTAGCTTTAACGCTGGCGCTGCCCCAACTGAGAGATAAGACAACTCGATTTCGGGATGGTATAACACAAATTTGGGACGGTTTTATCTGGCTTACCCCCTCTTTTGGTCAGCTTAGTCAGCTTGCCCCTTTATGTTGGGAACAAAAGAATCACACCAAAGATACATGGCCCAATAGCACTAGAGATATGGGATGGATACCCAAGGAACAGTGTATCCACACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATGGGCACAGCGACCGGGTATTTATTGGCTAGCTCCAAATGGAACGTCTTGGCTGTGCGGCACCAATCTATGGCCNTGGTTACCCCCAGGATGGTTAGGACGGTGTTCTTTGGGTTATGCCTGGGCACAAGGTCGAATAGTTCATACCCTTTCAAAGCCTGCAAATCTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTATTCCATTGGTATGATCATTTAGCTTCCATCTTTCTGCCACAACTGGGTATTGAGGATGTCATTTGGCATGTAGAGGCCCTAACCAATTACACANAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAACAATGAAGTTGCTCTTATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCNATCATAAAAACTGAGTGTTGTGTCTATATCCCAGATGAATCAGATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACTAACCTTTCAGATCCAACACCCTCTCTAAACGATTGGCTAAGCAGCTGGTTTGGATCTTGGGGAACCTGGTGGCAGAAGCTGTTACTTATTCTAGGAATTATAATCATTTGTTGCGTTTTGTCCTGTTTTTGTCTTTACTGCTGCTGCGGCATTTGTTTGCAATGGAGTCAACGCACAACTGAAAAAACTAAAATAATGGTCGCTCAAAGAATTGCATTAATTGAAGATGCAGCCGTGTAGCCTGACTCAGGTCACAAAGTCACTTCCTTCATGTTGCTTTAAATTCGGCCTATACCCCATCAGCTTTATAGCCTGACAAATTCCCCCTGCCGTGGGACATGACNCTCTAGGAATGAGCCTTCCTAGCGACGCGGGACTAAGCTCCTGAACATAAAAGGAGCCAAAACATTTGAGTTCATCTACGATGCTTTCTTCGAAAGATCTTGATGAAAAGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24_Prim | SPIB | 408 | 420 | - | 20.94 | TCACTTCCTCTTT |
| ERV24_Prim | Spi1 | 408 | 420 | + | 20.24 | AAAGAGGAAGTGA |
| ERV24_Prim | ESRRB | 4983 | 4992 | + | 18.10 | TCAAGGTCAT |
| ERV24_Prim | klu | 614 | 624 | - | 17.69 | ACACCCCCGCA |
| ERV24_Prim | SGR5 | 7241 | 7253 | - | 17.48 | AGTAAAGACAAAA |
| ERV24_Prim | HSFB3 | 1166 | 1177 | + | 17.33 | AAGCTTCTAAAA |
| ERV24_Prim | CDF5 | 2013 | 2033 | - | 17.14 | TTTGCTTTTCCTTTCTGTTTA |
| ERV24_Prim | ASIL2 | 107 | 115 | - | 16.84 | CTCCGGCGA |
| ERV24_Prim | ENAP2 | 107 | 115 | - | 16.79 | CTCCGGCGA |
| ERV24_Prim | IG1 | 5044 | 5052 | + | 16.76 | CTGCCGCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
