ERV24_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000115 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7575 |
| Kimura value | 22.49 |
| Tau index | 0.8850 |
| Description | ERV1 retrotransposon, ERV24_Prim subfamily |
| Comment | Endogenous element with LTR24 LTRs. ORFs: (roughly) gag 899-2224, pol 2228-5926, env 5961-7358. Pol product 78% similar to that of PRIMA4 and 69% similar to that of ERV8_MD. Env is 85% similar to that of PRIMA4. |
| Sequence |
TTTTGGCGACCNNGANGGGACCCGAAGCGGACCTCCAGTGATCCCCGTCACTTCGCCGACAGCCGGAGCCTTGGTACCAGCACGAACGACTTTCGTTCACCCGACCTCGCCGGAGTCAGCGGGGATCTCTGGTAAGGCCCCTCTCGGGNTCCGAATCCTCCCGGCTTTGGTTGAGGATTCAGACTTTATTCGAGCTACACACATTCCTAACTCGACGGGGTTGGAATTGAAGCTCTACTGCAAGGTAGGAGTTTCATTTGTTATTCTCTAGAGATTCTGCTGATCGCAGATTTGTGATTTTCACTTTTCTCTGAGGTTAAGGTTTTGTTTGGAATTACTCNTTAGAGTTTTTACAACCTTTTCTCTCATTCGAAATTTTGGTCAGGGAGAAAACAGTTTCTCTCTGAAAAGAGGAAGTGAATCTTTGTGGCTTAAGCAAAAATTTGTAATCTTTAAAACTGGCCAGATTCTGAAGCTCGGTTCAATTGACAAATCTAAACTTTCTTCTTGAGTGACCAAAATTATAAAAGGCTCTCTATGAGGACGAGATAAGTCCCGAAGATAAGAGACACTGCTCCTCCCGGCCGAAAGGCGCCTTAGGTGACTAAGGTCTTGCGGGGGTGTCGGAGTTTATCGCCCATGATGTGNAGCGGCCTCACAGGGNATCCCTTAAGAAGAACATNCAGGGANCCTTGCTTAATCCGGNGGGCGCACATAAAGGNTTGGTCACCCGGCGCCTTAAGCACCCAAGTCTCTTGGGATCACCGAGACACGTAAGAGGGAAGAACCGACTCANGGGTGACACCTTGAGGAGCGACGCCCACAAGCAGCACACTCGACCCAAAACACNTCCCACTAGGTCTTTGGTCATTCAAAAGGAAAGTCTAAATTATGGGNAATCGNGCTTCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCNTTAGAAACACCAGCTGGATTTATGTNTAACACTTATGGCGCCTCTTCNTGCAAATATCTAGGAAAATGGNCCCACNTAACTCGGGATGACCCCAAACTACAATGGCCAAAATGGGGNNCCTTTGAAATGCCTAAANTAATTTATTTGCGCGCNCAATTGGAAAAAGCTGGCTTTAGAATNAGACAAANTGAATGGGAGANCTACTTTCAATGGTACCTAGAAGCTTCTAAAAGAGGTTCTGANAAAGTCGCTTCCTTGCAGGAGGNAAACAAAAGATTGTCTGAAACNATTTCTGAATTGAAAAAGACTGCNGAAGTTTCTCCTCCTTCTCCAGCTCCTCCTTCTCTTTTGTCAGAACTTCCTTGTCTGGACTTACCTCCTCTTCCTCCTCCTCCTCCTTCTTCTGCTGTTCTGGCTCCATTTCGGGAATACCCTGTGTCCGGTAGAGGAGAACCTGCCTTGGTTTATCAACCATGGTCAAAAGTAGAACTTAAAGGCATAATTAAAGAATTCCCNGATCCTCTCCAAGATCCTATTGGATTTGCTAGAGAATTCGANTTAANCGTTCAAACTTATGANCCCGGATNTTCTGATCTNTATCAATTGATTCACATGTTGGTGTNAGAAAGCAAAGCCAANGANTGGNTAGNAAAGGCAAATTGGAANAATCCTTTAGAGGACTTTCANAAATNNNCTGAAGCAGATCGTGAANGGGCCCGCANTNCTGCCAAAGCTTTNCNNGATGCTATCCCCCNAGTTTTCCAAAAAGTAGTTGATTGGAACAAAATNCAGCAATGCCGACAAAATCTTGATGAGCCTGTAATGTCATACTATGAAAGATTTGAAAAAACGTTTAAACAATATTCAGGCCTATCAGAAGAAAGTTATGCTAACCACCAAAATGATACTCTCCTTAACTCAAACTTTATAAATGGATTAGATGAAGAATTGGCAATTATAATAAAGAGACAACGCCCCAGTTGGGCTACCTCTCAAACTCATGATCTAGTTAATTTTGCCGATCAAATGTCCCGTACCCTAACCAAGGAAGAAAAGGAAAGGAAAGTTAAACAGAAAGGAAAAGCAAATAAGATCATGAGTTTACAACTAAAACAATTGTCCAACCAATTTGTAACCCCTAAACGGCCTAATAAGTTCCAAAACCGACCCAATCCCCCGCTTTGCAATTACTGCAAAAAGCCTGGACATTTCAAAAAGGATTGTAGAAAATTAAAATGGAAAGAACAGCAACAGGCCAAAGAAAAAGAAGAATAGGGATGCTCCGAGGAAATCAAAGGGACTTTCCCCTTTCTCCTNACTAATGCCTTAGGAGAAATNGAAATTAATTTAAATGGAGAACANACACGAGCCCTTATTGACACTGGAGCTACGTTNTCAGTNNTNAACCCCACCTTATTACAAGGTCCCNTTCCTCGGAGTAAAAAAACAATACAAATGGTGGGNGTAACAAATACTCCTATANCAGCATATAAATCTCAACCTNTAGTTTTTCAGTTAGGNCCCCTACAGGGAACNCATGTTTTCCTCTTGGTTCCCTCGGCCCCCATNCATCTNNTAGGNAGAGACTTTTTGGAATTNCACAATGCNCACATTTCCTTCTCTCAAAAGGGGGAAATGTATTTAGAATTAGAAGATAAAATAGAATTATTAGGTTCGAAAATTTTTTCAAAATCTGATNCTTTTAATTCACAAATTGCAATTCATATTGCCATGGAGGAAACTAAATTGTTAAATAATGAAGAATTACAAGAGCTGTTAAAAATAGTACCTGATCANTTGTGGNCAAAATCTTCCACTGATATTGGGAAAATTATCTCGGCNGCCCCNATTAAAATTCAAATAGATCCATCNAAACCTCTNCCNAACCTTAANCAATACCCTCTAAGACCAGAGGCCTCGGAAGGGATNAGACCTATAATTTNGGATTATATAAAAAGAGGCTTNATTATTCCTTGCACNAGCCCNTGTAACACTCCAATCCTNCCNGTNAGAAAACCAAATGGNNGAGGATGGAGATTTGTNCAGGATCTNAGAGCNATTAATAANATNGTNATNCCTCGACNTCCNGTAGTACCAAACCCNNATACNTTGTTGACTGCCATCCCAACTGAAGGTGAGTTCTTCACTGTAATAGACCTNTGCNGTGCNTTCTTTAGCATTCCTGTNGATAAAGANAGTCAATNTCTNTTTGCCTTCACTTGGGAAGACAGACAATACACCTGGACNGTNATGCCTCAGGGGTNTACTGAGAGCCCNACTTATTTTTCNCAAATATTAAAAGCAGACCTNTCGGATGTCGANTTCCCTNAGAANTCCACCTTGATNCAGTATGTAGATGATTTACTTCTCTGCTCANNGGATAAGCAAGCCTCCANAGAGGACGGAATTCACCTNTTACAACAATTAGCTTCAAAGGGACACAAGGTTTCAAAAGAAAAACTTCAGTTCTGTCAAAAACAAGTNAAATATTTAGGNCACCTAATNTCAAAGGAAGGCCTTTTTATCAATCCGGANAGAATAAAAGGAATATTGGCCTTCCCTANCCCNAAAACTAAGAAACAACTGAGAGGATTTCTGGGATTGGCAGGATACTGCAGANATTGGATTCCAAACTTCTCCTTAANAGCTCAACCTTTATATACTCTCTTAAAACAAGATAAGCCAGACCCCCTGGAATGGACAGAGGAAAATCAGTTAACATCGGAAGAAATTAAAAAGAGTCTTACAGATGCCCCAGCNTTAGGACATCCAAATTATANTATTCCNTTTTCNTTGTTCGTTCATGAAAATCAGGGAAATGCCTTAGGNGTTCTNACTCAAAAACATGGNGATCAAAATAGACCCGTNGGATACTATAGTCAGCAACTGGACCCNGTGGCTAAAGGATTGCCACCTTGCNTGAGAGCAGTAACNGCNACNGCCNTGTTAGTAAAAGCNACCGAAGAAATAGTNATGGGATCTCCCCTCACCGTCTNTGTTCCACATTCTGTGGAAGCNCTTCTAAACTCGCACCACACTCAACATTNTTCGGTTAGTAGACTNACTTCTTATGAAGTTCTTCTNCTTTCTGCTCCCCATATTACNATCTCCAGATGTAATAATCTNAACCCTGCCACTCTTCTGCCCCTGCCTTCAGATGAAACGCCACATGATTGCATAATCTTAACCGACCAGCTTCTCTCTCCTAGGANGGACCTACAAGAAACTCCCCTTACTAACGCTGATGTTATTTGGTTTACGGATGGNTCTTACTTAAAGGACGAATCTGGAANTTATCGGGCAGGNTATGCTATAGCATCTTTAACTGAGGNAATAGAAAGCGCTCNTCTTCCAGGAGCNANNTCGGCCCAACAGGCAGAGTTAATNGCNCTNACTNGAGCCTGTCAATTGGCNAAAGGAANAACTGCTAATATTTATACAGATAGCAGATATGCTTTCGGAGTAGCTCATGATTTTGGNATGCTATGGAAACAAAGAGGATTTCTNACCTCTTCCGGTCAGCCCATAAAAAATGGACACCNTGTTTCAGAATTACTGGAAGCCATACTATTGCCAAAATCATTAGCCATTATCAAAATTCCNGGCCATTCAAAGNCAGACACTNCAGAAAGCAAAGGAAATCANTTAGCNGATANTACAGCAAAAAGNGCTGCCCTAAATGTATCTGAACAAGAAAATCAACCCATTTTAGCTTTTAAGGAAGCACTTGATTTTGATATAAAATTAGCTCAATCCAAAGCTCCAAAAACAGAACAAGAAAATTGGGAAACAAAAGGGGGAACGTACTCCTCCGAGACTGGGCTATGGTATGGACCAAACGGTCTACCCATACTTCCAACCAAATTACAGTCGTCTTTCTTAACTTATGTNCATGATTTAACTCATTGGAGCCCCGANAAAATGATTGCTTGGGGAAAACAATACTATTGGAAACCTTCTCCAACTGTTGCTCANAAGGTATACAATCGCTGCCATATCTGCCCAAAACATAATCCNGGGAAACCTTTACATAGTTCTCAAGGTCATTTTCCTTTACCAGAAGGCCCTTTCGAGGTATGGCAANTGGATTTTATTCAGCTGCCGCCATCNCAAGGATACGAGTATGTTCTNGTNATGGTTTGTATGTTTTCTCATTGGGTAGAAGCATTTCCNTGCAGAAGAGCNACGGCCTTAGCAGTAGGTAAAATTCTNTTAGAAAAAATTATTCCNNCTTGGGGAGTTCCTCTAGAACTCCACAGCGACNGAGGNACTCATTTTACTGGACAAGTAATNCAGTCAGTNTGTAAAATCTGGCCCATTCTNCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGACTGGTGGAACGNACAAATGGAATAATNAAAACTCAATTGGCAAAGTTNACNGAAGCTTTTAAANTTCCTTGGCCAAAGGCTCTTCCATTGGTNTTGCTTAACCTAAGATCNACCCCNTTTGGAAAACACCAGCTNTCTCCNTTTGAAATNATAACAGGNAGGCCTATGAANCTGNCTCCAGGAANTTNTGAACCTACGNTATTAAAAGGNGATATNCTNCATTATTGCNANGGCCTTATAAGGCANCTAACTAAAAACTNTAANTTAGTAAAAGANTCTTTCCACAGCGAGCTCCCGGGAGACGAAGANCTCAAAGATCACGGNCTCCAACCNGGAGATTTTGTCTATTGGAAACGACATCNANTAAAGGACTCCCTCCAACCNCGNTGGAAGGGNCCTTATCAGGTGCTNTTAACCAATCCTTGTGCTGCTAAGCTAAAGGGNATTGACTCCTGGATACACGTNNCTCATCTAAAGAAAGCCGCTTTGCCAATTTGGACTTCATCTCAAACCGGTGATCTAAAATTGAAATTCTCCAGAACCAACAAGGATGAGAAAAAGACGACATCCGAGGTAGACAGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAACGAACGCTTAATATTAATAATCGTTAATAGATGGAGAAGGTCTTCCTTTGCAAGTTCCCACTAAATTTCTTTCTTTTCGTCCCTAGTTCTTATGTTTTGTCGCTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTCTTGCAATGGGCTCAAGACTATGCTAACGGATTACAGAAAAACACTTGTTGGGTATGCGGCCTCATGCCCCTTTCCGGTGGTTCTGGCCTACCGTGGTGGGTATCTCCTTTCCAAGGACGAGATTGGATAGAATATCAGAAATATATCNGTGTTTCTCAAGAACAGTCATCGGTGCTTAACACTAGTATGACTAAGGATGACGTACATCACTGGCCTATTAATAATACTTTACAAAGCAAAGGACATGGGAAGAGCTTTTCGGTAAANGAAACCAGTTCGTTAGCTTTAACGCTGGCGCTGCCCCAACTGAGAGATAAGACAACTCGATTTCGGGATGGTATAACACAAATTTGGGACGGTTTTATCTGGCTTACCCCCTCTTTTGGTCAGCTTAGTCAGCTTGCCCCTTTATGTTGGGAACAAAAGAATCACACCAAAGATACATGGCCCAATAGCACTAGAGATATGGGATGGATACCCAAGGAACAGTGTATCCACACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATGGGCACAGCGACCGGGTATTTATTGGCTAGCTCCAAATGGAACGTCTTGGCTGTGCGGCACCAATCTATGGCCNTGGTTACCCCCAGGATGGTTAGGACGGTGTTCTTTGGGTTATGCCTGGGCACAAGGTCGAATAGTTCATACCCTTTCAAAGCCTGCAAATCTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTATTCCATTGGTATGATCATTTAGCTTCCATCTTTCTGCCACAACTGGGTATTGAGGATGTCATTTGGCATGTAGAGGCCCTAACCAATTACACANAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAACAATGAAGTTGCTCTTATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCNATCATAAAAACTGAGTGTTGTGTCTATATCCCAGATGAATCAGATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACTAACCTTTCAGATCCAACACCCTCTCTAAACGATTGGCTAAGCAGCTGGTTTGGATCTTGGGGAACCTGGTGGCAGAAGCTGTTACTTATTCTAGGAATTATAATCATTTGTTGCGTTTTGTCCTGTTTTTGTCTTTACTGCTGCTGCGGCATTTGTTTGCAATGGAGTCAACGCACAACTGAAAAAACTAAAATAATGGTCGCTCAAAGAATTGCATTAATTGAAGATGCAGCCGTGTAGCCTGACTCAGGTCACAAAGTCACTTCCTTCATGTTGCTTTAAATTCGGCCTATACCCCATCAGCTTTATAGCCTGACAAATTCCCCCTGCCGTGGGACATGACNCTCTAGGAATGAGCCTTCCTAGCGACGCGGGACTAAGCTCCTGAACATAAAAGGAGCCAAAACATTTGAGTTCATCTACGATGCTTTCTTCGAAAGATCTTGATGAAAAGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24_Prim | AT4G12670 | 432 | 460 | + | -14.07 | TTAAGCAAAAATTTGTAATCTTTAAAACT |
| ERV24_Prim | AT4G12670 | 6847 | 6875 | - | -15.66 | CTACATGCCAAATGACATCCTCAATACCC |
| ERV24_Prim | AT4G12670 | 2576 | 2604 | - | -16.24 | TTTATCTTCTAATTCTAAATACATTTCCC |
| ERV24_Prim | BCL6B | 5010 | 5026 | + | -18.11 | CCCTTTCGAGGTATGGC |
| ERV24_Prim | ZSCAN16 | 3652 | 3669 | - | -23.09 | CGATGTTAACTGATTTTC |
| ERV24_Prim | BPC5 | 5984 | 6013 | - | -42.07 | AGAACTAGGGACGAAAAGAAAGAAATTTAG |
| ERV24_Prim | BPC5 | 2008 | 2037 | + | -43.84 | AAAGTTAAACAGAAAGGAAAAGCAAATAAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
