ERV24_Prim
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000115 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Primates |
| Length | 7575 |
| Kimura value | 22.49 |
| Tau index | 0.8850 |
| Description | ERV1 retrotransposon, ERV24_Prim subfamily |
| Comment | Endogenous element with LTR24 LTRs. ORFs: (roughly) gag 899-2224, pol 2228-5926, env 5961-7358. Pol product 78% similar to that of PRIMA4 and 69% similar to that of ERV8_MD. Env is 85% similar to that of PRIMA4. |
| Sequence |
TTTTGGCGACCNNGANGGGACCCGAAGCGGACCTCCAGTGATCCCCGTCACTTCGCCGACAGCCGGAGCCTTGGTACCAGCACGAACGACTTTCGTTCACCCGACCTCGCCGGAGTCAGCGGGGATCTCTGGTAAGGCCCCTCTCGGGNTCCGAATCCTCCCGGCTTTGGTTGAGGATTCAGACTTTATTCGAGCTACACACATTCCTAACTCGACGGGGTTGGAATTGAAGCTCTACTGCAAGGTAGGAGTTTCATTTGTTATTCTCTAGAGATTCTGCTGATCGCAGATTTGTGATTTTCACTTTTCTCTGAGGTTAAGGTTTTGTTTGGAATTACTCNTTAGAGTTTTTACAACCTTTTCTCTCATTCGAAATTTTGGTCAGGGAGAAAACAGTTTCTCTCTGAAAAGAGGAAGTGAATCTTTGTGGCTTAAGCAAAAATTTGTAATCTTTAAAACTGGCCAGATTCTGAAGCTCGGTTCAATTGACAAATCTAAACTTTCTTCTTGAGTGACCAAAATTATAAAAGGCTCTCTATGAGGACGAGATAAGTCCCGAAGATAAGAGACACTGCTCCTCCCGGCCGAAAGGCGCCTTAGGTGACTAAGGTCTTGCGGGGGTGTCGGAGTTTATCGCCCATGATGTGNAGCGGCCTCACAGGGNATCCCTTAAGAAGAACATNCAGGGANCCTTGCTTAATCCGGNGGGCGCACATAAAGGNTTGGTCACCCGGCGCCTTAAGCACCCAAGTCTCTTGGGATCACCGAGACACGTAAGAGGGAAGAACCGACTCANGGGTGACACCTTGAGGAGCGACGCCCACAAGCAGCACACTCGACCCAAAACACNTCCCACTAGGTCTTTGGTCATTCAAAAGGAAAGTCTAAATTATGGGNAATCGNGCTTCTAAAACCGAGTCTTCCTCCTTAAGGAGAGATCCACCNTTAGAAACACCAGCTGGATTTATGTNTAACACTTATGGCGCCTCTTCNTGCAAATATCTAGGAAAATGGNCCCACNTAACTCGGGATGACCCCAAACTACAATGGCCAAAATGGGGNNCCTTTGAAATGCCTAAANTAATTTATTTGCGCGCNCAATTGGAAAAAGCTGGCTTTAGAATNAGACAAANTGAATGGGAGANCTACTTTCAATGGTACCTAGAAGCTTCTAAAAGAGGTTCTGANAAAGTCGCTTCCTTGCAGGAGGNAAACAAAAGATTGTCTGAAACNATTTCTGAATTGAAAAAGACTGCNGAAGTTTCTCCTCCTTCTCCAGCTCCTCCTTCTCTTTTGTCAGAACTTCCTTGTCTGGACTTACCTCCTCTTCCTCCTCCTCCTCCTTCTTCTGCTGTTCTGGCTCCATTTCGGGAATACCCTGTGTCCGGTAGAGGAGAACCTGCCTTGGTTTATCAACCATGGTCAAAAGTAGAACTTAAAGGCATAATTAAAGAATTCCCNGATCCTCTCCAAGATCCTATTGGATTTGCTAGAGAATTCGANTTAANCGTTCAAACTTATGANCCCGGATNTTCTGATCTNTATCAATTGATTCACATGTTGGTGTNAGAAAGCAAAGCCAANGANTGGNTAGNAAAGGCAAATTGGAANAATCCTTTAGAGGACTTTCANAAATNNNCTGAAGCAGATCGTGAANGGGCCCGCANTNCTGCCAAAGCTTTNCNNGATGCTATCCCCCNAGTTTTCCAAAAAGTAGTTGATTGGAACAAAATNCAGCAATGCCGACAAAATCTTGATGAGCCTGTAATGTCATACTATGAAAGATTTGAAAAAACGTTTAAACAATATTCAGGCCTATCAGAAGAAAGTTATGCTAACCACCAAAATGATACTCTCCTTAACTCAAACTTTATAAATGGATTAGATGAAGAATTGGCAATTATAATAAAGAGACAACGCCCCAGTTGGGCTACCTCTCAAACTCATGATCTAGTTAATTTTGCCGATCAAATGTCCCGTACCCTAACCAAGGAAGAAAAGGAAAGGAAAGTTAAACAGAAAGGAAAAGCAAATAAGATCATGAGTTTACAACTAAAACAATTGTCCAACCAATTTGTAACCCCTAAACGGCCTAATAAGTTCCAAAACCGACCCAATCCCCCGCTTTGCAATTACTGCAAAAAGCCTGGACATTTCAAAAAGGATTGTAGAAAATTAAAATGGAAAGAACAGCAACAGGCCAAAGAAAAAGAAGAATAGGGATGCTCCGAGGAAATCAAAGGGACTTTCCCCTTTCTCCTNACTAATGCCTTAGGAGAAATNGAAATTAATTTAAATGGAGAACANACACGAGCCCTTATTGACACTGGAGCTACGTTNTCAGTNNTNAACCCCACCTTATTACAAGGTCCCNTTCCTCGGAGTAAAAAAACAATACAAATGGTGGGNGTAACAAATACTCCTATANCAGCATATAAATCTCAACCTNTAGTTTTTCAGTTAGGNCCCCTACAGGGAACNCATGTTTTCCTCTTGGTTCCCTCGGCCCCCATNCATCTNNTAGGNAGAGACTTTTTGGAATTNCACAATGCNCACATTTCCTTCTCTCAAAAGGGGGAAATGTATTTAGAATTAGAAGATAAAATAGAATTATTAGGTTCGAAAATTTTTTCAAAATCTGATNCTTTTAATTCACAAATTGCAATTCATATTGCCATGGAGGAAACTAAATTGTTAAATAATGAAGAATTACAAGAGCTGTTAAAAATAGTACCTGATCANTTGTGGNCAAAATCTTCCACTGATATTGGGAAAATTATCTCGGCNGCCCCNATTAAAATTCAAATAGATCCATCNAAACCTCTNCCNAACCTTAANCAATACCCTCTAAGACCAGAGGCCTCGGAAGGGATNAGACCTATAATTTNGGATTATATAAAAAGAGGCTTNATTATTCCTTGCACNAGCCCNTGTAACACTCCAATCCTNCCNGTNAGAAAACCAAATGGNNGAGGATGGAGATTTGTNCAGGATCTNAGAGCNATTAATAANATNGTNATNCCTCGACNTCCNGTAGTACCAAACCCNNATACNTTGTTGACTGCCATCCCAACTGAAGGTGAGTTCTTCACTGTAATAGACCTNTGCNGTGCNTTCTTTAGCATTCCTGTNGATAAAGANAGTCAATNTCTNTTTGCCTTCACTTGGGAAGACAGACAATACACCTGGACNGTNATGCCTCAGGGGTNTACTGAGAGCCCNACTTATTTTTCNCAAATATTAAAAGCAGACCTNTCGGATGTCGANTTCCCTNAGAANTCCACCTTGATNCAGTATGTAGATGATTTACTTCTCTGCTCANNGGATAAGCAAGCCTCCANAGAGGACGGAATTCACCTNTTACAACAATTAGCTTCAAAGGGACACAAGGTTTCAAAAGAAAAACTTCAGTTCTGTCAAAAACAAGTNAAATATTTAGGNCACCTAATNTCAAAGGAAGGCCTTTTTATCAATCCGGANAGAATAAAAGGAATATTGGCCTTCCCTANCCCNAAAACTAAGAAACAACTGAGAGGATTTCTGGGATTGGCAGGATACTGCAGANATTGGATTCCAAACTTCTCCTTAANAGCTCAACCTTTATATACTCTCTTAAAACAAGATAAGCCAGACCCCCTGGAATGGACAGAGGAAAATCAGTTAACATCGGAAGAAATTAAAAAGAGTCTTACAGATGCCCCAGCNTTAGGACATCCAAATTATANTATTCCNTTTTCNTTGTTCGTTCATGAAAATCAGGGAAATGCCTTAGGNGTTCTNACTCAAAAACATGGNGATCAAAATAGACCCGTNGGATACTATAGTCAGCAACTGGACCCNGTGGCTAAAGGATTGCCACCTTGCNTGAGAGCAGTAACNGCNACNGCCNTGTTAGTAAAAGCNACCGAAGAAATAGTNATGGGATCTCCCCTCACCGTCTNTGTTCCACATTCTGTGGAAGCNCTTCTAAACTCGCACCACACTCAACATTNTTCGGTTAGTAGACTNACTTCTTATGAAGTTCTTCTNCTTTCTGCTCCCCATATTACNATCTCCAGATGTAATAATCTNAACCCTGCCACTCTTCTGCCCCTGCCTTCAGATGAAACGCCACATGATTGCATAATCTTAACCGACCAGCTTCTCTCTCCTAGGANGGACCTACAAGAAACTCCCCTTACTAACGCTGATGTTATTTGGTTTACGGATGGNTCTTACTTAAAGGACGAATCTGGAANTTATCGGGCAGGNTATGCTATAGCATCTTTAACTGAGGNAATAGAAAGCGCTCNTCTTCCAGGAGCNANNTCGGCCCAACAGGCAGAGTTAATNGCNCTNACTNGAGCCTGTCAATTGGCNAAAGGAANAACTGCTAATATTTATACAGATAGCAGATATGCTTTCGGAGTAGCTCATGATTTTGGNATGCTATGGAAACAAAGAGGATTTCTNACCTCTTCCGGTCAGCCCATAAAAAATGGACACCNTGTTTCAGAATTACTGGAAGCCATACTATTGCCAAAATCATTAGCCATTATCAAAATTCCNGGCCATTCAAAGNCAGACACTNCAGAAAGCAAAGGAAATCANTTAGCNGATANTACAGCAAAAAGNGCTGCCCTAAATGTATCTGAACAAGAAAATCAACCCATTTTAGCTTTTAAGGAAGCACTTGATTTTGATATAAAATTAGCTCAATCCAAAGCTCCAAAAACAGAACAAGAAAATTGGGAAACAAAAGGGGGAACGTACTCCTCCGAGACTGGGCTATGGTATGGACCAAACGGTCTACCCATACTTCCAACCAAATTACAGTCGTCTTTCTTAACTTATGTNCATGATTTAACTCATTGGAGCCCCGANAAAATGATTGCTTGGGGAAAACAATACTATTGGAAACCTTCTCCAACTGTTGCTCANAAGGTATACAATCGCTGCCATATCTGCCCAAAACATAATCCNGGGAAACCTTTACATAGTTCTCAAGGTCATTTTCCTTTACCAGAAGGCCCTTTCGAGGTATGGCAANTGGATTTTATTCAGCTGCCGCCATCNCAAGGATACGAGTATGTTCTNGTNATGGTTTGTATGTTTTCTCATTGGGTAGAAGCATTTCCNTGCAGAAGAGCNACGGCCTTAGCAGTAGGTAAAATTCTNTTAGAAAAAATTATTCCNNCTTGGGGAGTTCCTCTAGAACTCCACAGCGACNGAGGNACTCATTTTACTGGACAAGTAATNCAGTCAGTNTGTAAAATCTGGCCCATTCTNCAACATTTCCATTGTGCCTATCACCCCCAGTCNTCTGGACTGGTGGAACGNACAAATGGAATAATNAAAACTCAATTGGCAAAGTTNACNGAAGCTTTTAAANTTCCTTGGCCAAAGGCTCTTCCATTGGTNTTGCTTAACCTAAGATCNACCCCNTTTGGAAAACACCAGCTNTCTCCNTTTGAAATNATAACAGGNAGGCCTATGAANCTGNCTCCAGGAANTTNTGAACCTACGNTATTAAAAGGNGATATNCTNCATTATTGCNANGGCCTTATAAGGCANCTAACTAAAAACTNTAANTTAGTAAAAGANTCTTTCCACAGCGAGCTCCCGGGAGACGAAGANCTCAAAGATCACGGNCTCCAACCNGGAGATTTTGTCTATTGGAAACGACATCNANTAAAGGACTCCCTCCAACCNCGNTGGAAGGGNCCTTATCAGGTGCTNTTAACCAATCCTTGTGCTGCTAAGCTAAAGGGNATTGACTCCTGGATACACGTNNCTCATCTAAAGAAAGCCGCTTTGCCAATTTGGACTTCATCTCAAACCGGTGATCTAAAATTGAAATTCTCCAGAACCAACAAGGATGAGAAAAAGACGACATCCGAGGTAGACAGCTTTCCCAAGACACCGGACCAGGCCTGTATCTAAACGAACGCTTAATATTAATAATCGTTAATAGATGGAGAAGGTCTTCCTTTGCAAGTTCCCACTAAATTTCTTTCTTTTCGTCCCTAGTTCTTATGTTTTGTCGCTACTATCACCAGCTGTTGCCCATGAAGCAAACCTCTTCTTGCAATGGGCTCAAGACTATGCTAACGGATTACAGAAAAACACTTGTTGGGTATGCGGCCTCATGCCCCTTTCCGGTGGTTCTGGCCTACCGTGGTGGGTATCTCCTTTCCAAGGACGAGATTGGATAGAATATCAGAAATATATCNGTGTTTCTCAAGAACAGTCATCGGTGCTTAACACTAGTATGACTAAGGATGACGTACATCACTGGCCTATTAATAATACTTTACAAAGCAAAGGACATGGGAAGAGCTTTTCGGTAAANGAAACCAGTTCGTTAGCTTTAACGCTGGCGCTGCCCCAACTGAGAGATAAGACAACTCGATTTCGGGATGGTATAACACAAATTTGGGACGGTTTTATCTGGCTTACCCCCTCTTTTGGTCAGCTTAGTCAGCTTGCCCCTTTATGTTGGGAACAAAAGAATCACACCAAAGATACATGGCCCAATAGCACTAGAGATATGGGATGGATACCCAAGGAACAGTGTATCCACACCATTATATTACAAAGTACTGATTGGCATGCCACTGAATGGGCACAGCGACCGGGTATTTATTGGCTAGCTCCAAATGGAACGTCTTGGCTGTGCGGCACCAATCTATGGCCNTGGTTACCCCCAGGATGGTTAGGACGGTGTTCTTTGGGTTATGCCTGGGCACAAGGTCGAATAGTTCATACCCTTTCAAAGCCTGCAAATCTTCCTCATTTACAATCTCGTTGGGTTCGTTCTGTATTCCATTGGTATGATCATTTAGCTTCCATCTTTCTGCCACAACTGGGTATTGAGGATGTCATTTGGCATGTAGAGGCCCTAACCAATTACACANAAAAGGCCCTAAATGATAGCCGCATGGGTATCTCGTTATTAAACAATGAAGTTGCTCTTATGAGAAAGGCTGTATTACAGAACCGTATGGCTTTAGACATACTCACTGCAGCCCAAGGGGGAACCTGCGCNATCATAAAAACTGAGTGTTGTGTCTATATCCCAGATGAATCAGATAACATCACTAAATTAATGGCTGATATGAAAACCCAAATAACTAACCTTTCAGATCCAACACCCTCTCTAAACGATTGGCTAAGCAGCTGGTTTGGATCTTGGGGAACCTGGTGGCAGAAGCTGTTACTTATTCTAGGAATTATAATCATTTGTTGCGTTTTGTCCTGTTTTTGTCTTTACTGCTGCTGCGGCATTTGTTTGCAATGGAGTCAACGCACAACTGAAAAAACTAAAATAATGGTCGCTCAAAGAATTGCATTAATTGAAGATGCAGCCGTGTAGCCTGACTCAGGTCACAAAGTCACTTCCTTCATGTTGCTTTAAATTCGGCCTATACCCCATCAGCTTTATAGCCTGACAAATTCCCCCTGCCGTGGGACATGACNCTCTAGGAATGAGCCTTCCTAGCGACGCGGGACTAAGCTCCTGAACATAAAAGGAGCCAAAACATTTGAGTTCATCTACGATGCTTTCTTCGAAAGATCTTGATGAAAAGGGGGAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| ERV24_Prim | HSFB2B | 1163 | 1173 | - | 16.70 | AGAAGCTTCTA |
| ERV24_Prim | HSFB2B | 1164 | 1174 | + | 16.70 | AGAAGCTTCTA |
| ERV24_Prim | DOF3.6 | 2013 | 2033 | - | 16.48 | TTTGCTTTTCCTTTCTGTTTA |
| ERV24_Prim | Mecom | 6376 | 6386 | + | 16.44 | AGATAAGACAA |
| ERV24_Prim | HLH4C | 6032 | 6045 | - | 16.34 | GCAACAGCTGGTGA |
| ERV24_Prim | ESRRA | 4983 | 4991 | + | 16.33 | TCAAGGTCA |
| ERV24_Prim | AS2 | 108 | 125 | + | 16.33 | CGCCGGAGTCAGCGGGGA |
| ERV24_Prim | PRDM9 | 1324 | 1343 | - | 16.24 | GGAGGAGGAGGAGGAAGAGG |
| ERV24_Prim | Tcf21 | 6034 | 6043 | - | 16.22 | AACAGCTGGT |
| ERV24_Prim | ZNF677 | 2183 | 2194 | + | 16.16 | GGAAAGAACAGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
