Charlie7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000627 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Metatheria,Eutheria |
| Length | 2615 |
| Kimura value | 27.16 |
| Tau index | 0.9672 |
| Description | hAT-Charlie DNA transposon, Charlie7 subfamily |
| Comment | 14bp TIR. TSD: NTCTAGAN. ORF at roughly pos. 591-2354. |
| Sequence |
CAGTGGTCTCCAAAGTGGGGTGCGTGCACCCCAGGGAGTGCGCAAGACGATCCATTGGGGTGCGGGAAGAAAATATTAGAACTTCTATTTATATTTATTTTTNATCTAAAAAATAAGAAAGAAATTAAGCTTTACTAATATTTAATATACGGATTGACACTGGCGCCCTCACTCGGTCCGTATGTCAGACGGTCACGTGTCACATGCGGTACGCGAGGTATCCTGAGGGAAGAGTGGGAGTTCCACAACGCGGAGGGGTTGACAGTGGCGCCCTCACTCGTTCGTTCGCTTTCAGCGTATTGCGACGTATTGCAGTTTACGTGTGCCCGGTTAAGTGGATTTACGGATTATATTATCTAGTTTTAACTAAACTAACCCTCACAAAATGGACAAGTGGCTTAAAAAGATTCCTGCAAAGAAACCGCGGATTGAAGATAATACTAATAATGCAAGCACAAGCGAACAACAAGAAAATGGCAGAGCTGACACTTCTACTCCTAGTACGAGCTCTTCGTCAGCCACATTACGAGGTAAAAACAATGACGATCTAATCAGATCTGACAAGAAGTCGGCCAAAAAAATTCGAAATTATCAAGAAGACTATTTGAAATATGGATTTACATCCACTATCGTTAACGATGAACCTCGCCCTAAGTGTATATTGTGCCTTGAGATATTAGCTAATGATAGTATGAAGCCATCACGATTAGCAAGACATTTAAAAACTAAGCATCCAGAACATGAAGACAAACCTCTACAATTTTTTCAGCGATGTTTAAAGTCATGCGATACTCAATCCAGTACTTTACAAAATTTCACTAAACTTAATGATAAATGTTTAGAAGCCTCTTTTGAGGTTTCTTACTTAATAGCGAAAGACAAAAAGCCACATACCATTGGGGAAACACTTGTTCTTCCTGCCGCGGTAAAAATGGCTGAAATAATACACGGAAAACAATATGGCGACAAACTAAAATGCATTCCTTTGTCAGCAAATACTGTTGGAAGACGCATAGAAAACATTGCTGAAGATTTGAAGAAACAAGTATTAGAACAAATTACGCAGTGTGGGAGGTTTGCTATACAGTTGGATGAAAGTACAGATGTTTCTAACATGTCTCAGCTTATGGTATTTGCTAGATTCTGTTTCAATAATGAAATACACGAAGAACTACTTTTTTGTGAGCCACTAAAGGAAAGATGTACCGGAGAAGATATATTCTCAACAGTAAATGACTTCTTTAATAAAAACAATGTTTTATGGGAAAACTGTGTAAGTGTAACCACTGATGGAGCGGCTGCTTTGACTGGAATAAAAAAAGGATTCCGGGGTAAGGTTACAGAGATAGCACCACACGTGAAATTCATTCACTGCATCATTCATAGGCAAGCTATTGCAGCAAAGAAGTTGAAGCCAGAAGTGCACAAAGTGCTACAGGATGTCATCGATGTGGTTAATTTTATAAAAACAAGACCTTTAAAATATAGTAGAATCTTTACAATACTTTGTAATGAGATGGGGAGTGACCATGAAAATCTTTTGTACCACACAGAGGTTCGCTGGTTATCTCGTGGCAAAGTACTTAAAAGAGTTGTCGAACTTAAAGATGAGTTACGCATTTTTCTTTTACAAAAAGACAAGTGTTCCAAATTTGCTGACCTTTTCTGTGATGACAAGTGGCTGTCAGTAGTATGCTACCTAGCAGATATTTTTGAAAAAATAAACACACTTAATCTGTCCCTTCAAGGTAAAGGTGACGTTTTAACAATGAGTGAGAAAGTAACTGCTTTTCGAAAGAAACTCGTGCTATGGAGAGAGCATTTTGAAAACGGATGTTTGGAAATGTTTCCATCGTTATGTGATTTTGTTGCCGAAAACGATGTAAATGTGTCACCTATAAAAACTCTCATATCTGCACACTTTAAAAACTTGGAAACAGAATTTTCTAACCTGTTTAAAAATCTTCCAAATGAAGAGTTTCAGTGGGTTTTGAACCCATTTGTTAAAAATATAAAAATGCAACACCTTCCGATTAGTTTGCAAGAACAACTGATTGACATCAGGGAAGATGGAAATTTACTAGCCGAATTTCAACAAAAACCTTTGCATAATTGGTGGATGGGATTGAAAAATGAGTATCATGATTTAGTAAGCGCAGCCAACGATGCACTTCTTCCATTTGGATCTACGTATCTTTGTGAGGTATCTTTTTCAGCTATGACAGCCATTAAAACCAAGTATCGAAATAAACTGAACTTAGAACCAGACCTTCGAATCGCTGTATCACAAAGTGTTAAACCAAGATTTTCAAAAATAATGAAGCATATTCAATCACATTGCTCTCACTAAAATATTATTAATAATATTTTAGTGAGAGCAAAAATGTTTTGTACCATTAATAAATAAAATAAAAATTATTTTAAAATATTGTTTATTTCATCTTTATCTCATCCTTTTAAAATTTCTATTTTTGTGTATGTTTTATAATGTACATAATATATTAGTACAGTAGTACATGTATATAATTTATAAATAAATATACATATATTGGGGGTGCATGCTCAAAATTTTTTACTGATGGGGATGCGCGATCAAAAAAGTTTGGAGACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie7 | ceh-60 | 2052 | 2060 | + | 15.89 | TGATTGACA |
| Charlie7 | TFEC | 192 | 199 | - | 15.88 | CACGTGAC |
| Charlie7 | Foxq1 | 2428 | 2437 | + | 15.87 | ATTGTTTATT |
| Charlie7 | LHY | 1705 | 1713 | + | 15.86 | AGATATTTT |
| Charlie7 | FLC | 2462 | 2475 | - | 15.67 | ACAAAAATAGAAAT |
| Charlie7 | RVE1 | 1705 | 1713 | - | 15.59 | AAAATATCT |
| Charlie7 | ZNF766 | 855 | 863 | - | 15.50 | AAGAAACCT |
| Charlie7 | RVE7L | 1705 | 1713 | - | 15.47 | AAAATATCT |
| Charlie7 | Mafb | 1650 | 1660 | + | 15.13 | AATTTGCTGAC |
| Charlie7 | SFP1 | 2565 | 2574 | - | 15.11 | AAAAAATTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
