Charlie7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000627 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Metatheria,Eutheria |
| Length | 2615 |
| Kimura value | 27.16 |
| Tau index | 0.9672 |
| Description | hAT-Charlie DNA transposon, Charlie7 subfamily |
| Comment | 14bp TIR. TSD: NTCTAGAN. ORF at roughly pos. 591-2354. |
| Sequence |
CAGTGGTCTCCAAAGTGGGGTGCGTGCACCCCAGGGAGTGCGCAAGACGATCCATTGGGGTGCGGGAAGAAAATATTAGAACTTCTATTTATATTTATTTTTNATCTAAAAAATAAGAAAGAAATTAAGCTTTACTAATATTTAATATACGGATTGACACTGGCGCCCTCACTCGGTCCGTATGTCAGACGGTCACGTGTCACATGCGGTACGCGAGGTATCCTGAGGGAAGAGTGGGAGTTCCACAACGCGGAGGGGTTGACAGTGGCGCCCTCACTCGTTCGTTCGCTTTCAGCGTATTGCGACGTATTGCAGTTTACGTGTGCCCGGTTAAGTGGATTTACGGATTATATTATCTAGTTTTAACTAAACTAACCCTCACAAAATGGACAAGTGGCTTAAAAAGATTCCTGCAAAGAAACCGCGGATTGAAGATAATACTAATAATGCAAGCACAAGCGAACAACAAGAAAATGGCAGAGCTGACACTTCTACTCCTAGTACGAGCTCTTCGTCAGCCACATTACGAGGTAAAAACAATGACGATCTAATCAGATCTGACAAGAAGTCGGCCAAAAAAATTCGAAATTATCAAGAAGACTATTTGAAATATGGATTTACATCCACTATCGTTAACGATGAACCTCGCCCTAAGTGTATATTGTGCCTTGAGATATTAGCTAATGATAGTATGAAGCCATCACGATTAGCAAGACATTTAAAAACTAAGCATCCAGAACATGAAGACAAACCTCTACAATTTTTTCAGCGATGTTTAAAGTCATGCGATACTCAATCCAGTACTTTACAAAATTTCACTAAACTTAATGATAAATGTTTAGAAGCCTCTTTTGAGGTTTCTTACTTAATAGCGAAAGACAAAAAGCCACATACCATTGGGGAAACACTTGTTCTTCCTGCCGCGGTAAAAATGGCTGAAATAATACACGGAAAACAATATGGCGACAAACTAAAATGCATTCCTTTGTCAGCAAATACTGTTGGAAGACGCATAGAAAACATTGCTGAAGATTTGAAGAAACAAGTATTAGAACAAATTACGCAGTGTGGGAGGTTTGCTATACAGTTGGATGAAAGTACAGATGTTTCTAACATGTCTCAGCTTATGGTATTTGCTAGATTCTGTTTCAATAATGAAATACACGAAGAACTACTTTTTTGTGAGCCACTAAAGGAAAGATGTACCGGAGAAGATATATTCTCAACAGTAAATGACTTCTTTAATAAAAACAATGTTTTATGGGAAAACTGTGTAAGTGTAACCACTGATGGAGCGGCTGCTTTGACTGGAATAAAAAAAGGATTCCGGGGTAAGGTTACAGAGATAGCACCACACGTGAAATTCATTCACTGCATCATTCATAGGCAAGCTATTGCAGCAAAGAAGTTGAAGCCAGAAGTGCACAAAGTGCTACAGGATGTCATCGATGTGGTTAATTTTATAAAAACAAGACCTTTAAAATATAGTAGAATCTTTACAATACTTTGTAATGAGATGGGGAGTGACCATGAAAATCTTTTGTACCACACAGAGGTTCGCTGGTTATCTCGTGGCAAAGTACTTAAAAGAGTTGTCGAACTTAAAGATGAGTTACGCATTTTTCTTTTACAAAAAGACAAGTGTTCCAAATTTGCTGACCTTTTCTGTGATGACAAGTGGCTGTCAGTAGTATGCTACCTAGCAGATATTTTTGAAAAAATAAACACACTTAATCTGTCCCTTCAAGGTAAAGGTGACGTTTTAACAATGAGTGAGAAAGTAACTGCTTTTCGAAAGAAACTCGTGCTATGGAGAGAGCATTTTGAAAACGGATGTTTGGAAATGTTTCCATCGTTATGTGATTTTGTTGCCGAAAACGATGTAAATGTGTCACCTATAAAAACTCTCATATCTGCACACTTTAAAAACTTGGAAACAGAATTTTCTAACCTGTTTAAAAATCTTCCAAATGAAGAGTTTCAGTGGGTTTTGAACCCATTTGTTAAAAATATAAAAATGCAACACCTTCCGATTAGTTTGCAAGAACAACTGATTGACATCAGGGAAGATGGAAATTTACTAGCCGAATTTCAACAAAAACCTTTGCATAATTGGTGGATGGGATTGAAAAATGAGTATCATGATTTAGTAAGCGCAGCCAACGATGCACTTCTTCCATTTGGATCTACGTATCTTTGTGAGGTATCTTTTTCAGCTATGACAGCCATTAAAACCAAGTATCGAAATAAACTGAACTTAGAACCAGACCTTCGAATCGCTGTATCACAAAGTGTTAAACCAAGATTTTCAAAAATAATGAAGCATATTCAATCACATTGCTCTCACTAAAATATTATTAATAATATTTTAGTGAGAGCAAAAATGTTTTGTACCATTAATAAATAAAATAAAAATTATTTTAAAATATTGTTTATTTCATCTTTATCTCATCCTTTTAAAATTTCTATTTTTGTGTATGTTTTATAATGTACATAATATATTAGTACAGTAGTACATGTATATAATTTATAAATAAATATACATATATTGGGGGTGCATGCTCAAAATTTTTTACTGATGGGGATGCGCGATCAAAAAAGTTTGGAGACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie7 | AGL27 | 2462 | 2475 | + | 18.50 | ATTTCTATTTTTGT |
| Charlie7 | bHLH18 | 194 | 208 | - | 17.99 | CGCATGTGACACGTG |
| Charlie7 | phol | 956 | 965 | - | 17.89 | CGCCATATTG |
| Charlie7 | AP1 | 2463 | 2475 | - | 17.15 | ACAAAAATAGAAA |
| Charlie7 | ZmbZIP96 | 192 | 202 | + | 17.13 | GTCACGTGTCA |
| Charlie7 | SOC1 | 2463 | 2475 | + | 17.11 | TTTCTATTTTTGT |
| Charlie7 | squamosa | 2463 | 2475 | - | 16.54 | ACAAAAATAGAAA |
| Charlie7 | ZNF85 | 404 | 415 | + | 16.54 | AAGATTCCTGCA |
| Charlie7 | RVE4 | 1705 | 1713 | + | 16.53 | AGATATTTT |
| Charlie7 | ZNF610 | 1292 | 1301 | - | 16.46 | CAGCCGCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
