Charlie7
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000627 |
|---|---|
| TE superfamily | Charlie |
| TE order | DNA |
| Species | Metatheria,Eutheria |
| Length | 2615 |
| Kimura value | 27.16 |
| Tau index | 0.9672 |
| Description | hAT-Charlie DNA transposon, Charlie7 subfamily |
| Comment | 14bp TIR. TSD: NTCTAGAN. ORF at roughly pos. 591-2354. |
| Sequence |
CAGTGGTCTCCAAAGTGGGGTGCGTGCACCCCAGGGAGTGCGCAAGACGATCCATTGGGGTGCGGGAAGAAAATATTAGAACTTCTATTTATATTTATTTTTNATCTAAAAAATAAGAAAGAAATTAAGCTTTACTAATATTTAATATACGGATTGACACTGGCGCCCTCACTCGGTCCGTATGTCAGACGGTCACGTGTCACATGCGGTACGCGAGGTATCCTGAGGGAAGAGTGGGAGTTCCACAACGCGGAGGGGTTGACAGTGGCGCCCTCACTCGTTCGTTCGCTTTCAGCGTATTGCGACGTATTGCAGTTTACGTGTGCCCGGTTAAGTGGATTTACGGATTATATTATCTAGTTTTAACTAAACTAACCCTCACAAAATGGACAAGTGGCTTAAAAAGATTCCTGCAAAGAAACCGCGGATTGAAGATAATACTAATAATGCAAGCACAAGCGAACAACAAGAAAATGGCAGAGCTGACACTTCTACTCCTAGTACGAGCTCTTCGTCAGCCACATTACGAGGTAAAAACAATGACGATCTAATCAGATCTGACAAGAAGTCGGCCAAAAAAATTCGAAATTATCAAGAAGACTATTTGAAATATGGATTTACATCCACTATCGTTAACGATGAACCTCGCCCTAAGTGTATATTGTGCCTTGAGATATTAGCTAATGATAGTATGAAGCCATCACGATTAGCAAGACATTTAAAAACTAAGCATCCAGAACATGAAGACAAACCTCTACAATTTTTTCAGCGATGTTTAAAGTCATGCGATACTCAATCCAGTACTTTACAAAATTTCACTAAACTTAATGATAAATGTTTAGAAGCCTCTTTTGAGGTTTCTTACTTAATAGCGAAAGACAAAAAGCCACATACCATTGGGGAAACACTTGTTCTTCCTGCCGCGGTAAAAATGGCTGAAATAATACACGGAAAACAATATGGCGACAAACTAAAATGCATTCCTTTGTCAGCAAATACTGTTGGAAGACGCATAGAAAACATTGCTGAAGATTTGAAGAAACAAGTATTAGAACAAATTACGCAGTGTGGGAGGTTTGCTATACAGTTGGATGAAAGTACAGATGTTTCTAACATGTCTCAGCTTATGGTATTTGCTAGATTCTGTTTCAATAATGAAATACACGAAGAACTACTTTTTTGTGAGCCACTAAAGGAAAGATGTACCGGAGAAGATATATTCTCAACAGTAAATGACTTCTTTAATAAAAACAATGTTTTATGGGAAAACTGTGTAAGTGTAACCACTGATGGAGCGGCTGCTTTGACTGGAATAAAAAAAGGATTCCGGGGTAAGGTTACAGAGATAGCACCACACGTGAAATTCATTCACTGCATCATTCATAGGCAAGCTATTGCAGCAAAGAAGTTGAAGCCAGAAGTGCACAAAGTGCTACAGGATGTCATCGATGTGGTTAATTTTATAAAAACAAGACCTTTAAAATATAGTAGAATCTTTACAATACTTTGTAATGAGATGGGGAGTGACCATGAAAATCTTTTGTACCACACAGAGGTTCGCTGGTTATCTCGTGGCAAAGTACTTAAAAGAGTTGTCGAACTTAAAGATGAGTTACGCATTTTTCTTTTACAAAAAGACAAGTGTTCCAAATTTGCTGACCTTTTCTGTGATGACAAGTGGCTGTCAGTAGTATGCTACCTAGCAGATATTTTTGAAAAAATAAACACACTTAATCTGTCCCTTCAAGGTAAAGGTGACGTTTTAACAATGAGTGAGAAAGTAACTGCTTTTCGAAAGAAACTCGTGCTATGGAGAGAGCATTTTGAAAACGGATGTTTGGAAATGTTTCCATCGTTATGTGATTTTGTTGCCGAAAACGATGTAAATGTGTCACCTATAAAAACTCTCATATCTGCACACTTTAAAAACTTGGAAACAGAATTTTCTAACCTGTTTAAAAATCTTCCAAATGAAGAGTTTCAGTGGGTTTTGAACCCATTTGTTAAAAATATAAAAATGCAACACCTTCCGATTAGTTTGCAAGAACAACTGATTGACATCAGGGAAGATGGAAATTTACTAGCCGAATTTCAACAAAAACCTTTGCATAATTGGTGGATGGGATTGAAAAATGAGTATCATGATTTAGTAAGCGCAGCCAACGATGCACTTCTTCCATTTGGATCTACGTATCTTTGTGAGGTATCTTTTTCAGCTATGACAGCCATTAAAACCAAGTATCGAAATAAACTGAACTTAGAACCAGACCTTCGAATCGCTGTATCACAAAGTGTTAAACCAAGATTTTCAAAAATAATGAAGCATATTCAATCACATTGCTCTCACTAAAATATTATTAATAATATTTTAGTGAGAGCAAAAATGTTTTGTACCATTAATAAATAAAATAAAAATTATTTTAAAATATTGTTTATTTCATCTTTATCTCATCCTTTTAAAATTTCTATTTTTGTGTATGTTTTATAATGTACATAATATATTAGTACAGTAGTACATGTATATAATTTATAAATAAATATACATATATTGGGGGTGCATGCTCAAAATTTTTTACTGATGGGGATGCGCGATCAAAAAAGTTTGGAGACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie7 | RVE7 | 1705 | 1713 | - | 16.38 | AAAATATCT |
| Charlie7 | SoxN | 2330 | 2340 | + | 16.38 | CAATCACATTG |
| Charlie7 | RVE6 | 1705 | 1713 | + | 16.23 | AGATATTTT |
| Charlie7 | RVE5 | 1705 | 1713 | + | 16.21 | AGATATTTT |
| Charlie7 | Wt1 | 1066 | 1075 | - | 16.15 | CCTCCCACAC |
| Charlie7 | RVE8 | 1705 | 1713 | + | 16.08 | AGATATTTT |
| Charlie7 | Zfp961 | 161 | 168 | - | 15.99 | GGGCGCCA |
| Charlie7 | Zfp961 | 266 | 273 | - | 15.99 | GGGCGCCA |
| Charlie7 | AP3 | 2463 | 2475 | - | 15.94 | ACAAAAATAGAAA |
| Charlie7 | DPBF3 | 192 | 202 | - | 15.90 | TGACACGTGAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
