Charlie26a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000103 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 325 |
| Kimura value | 28.01 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie26a subfamily (non-autonomous) |
| Comment | 14 bp TIR. |
| Sequence |
CAGTGATGAGCAACCCGCGGCCCGCCCGGCTTCGCGATACGGCCCGCGATCTAATTTCAGGATGAAAGATTAGAAAGCTGCCTCCGTGTTGCTACTTCTCAAATATGCCCAGATATTAACATTTTAGTGGCTAAAAAGCAGTGCCAATTTTCTCATTGACATTCTTCTATTCAATAAAGTAGGTAATCTAAGTTGTAAGAATATACATTTTCCCCCATGGGACTCAATAAAGCTATTTTCATTTTGAATGAAAAAAAAATGCGGCCCGTAAACATTTTTATTTTTCCTGAATTGGCCCTCGTGCAAAAAAAGTTGCTCACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie26a | FOXK1 | 268 | 274 | + | 12.77 | GTAAACA |
| Charlie26a | AGL1 | 283 | 298 | - | 12.73 | GGGCCAATTCAGGAAA |
| Charlie26a | Hoxd13 | 172 | 178 | + | 12.73 | CAATAAA |
| Charlie26a | Hoxd13 | 225 | 231 | + | 12.73 | CAATAAA |
| Charlie26a | SFL1 | 161 | 170 | - | 12.72 | ATAGAAGAAT |
| Charlie26a | DOF4.5 | 227 | 239 | + | 12.61 | ATAAAGCTATTTT |
| Charlie26a | bin | 268 | 274 | + | 12.56 | GTAAACA |
| Charlie26a | Foxo3 | 268 | 274 | + | 12.53 | GTAAACA |
| Charlie26a | FOXA3 | 268 | 274 | + | 12.48 | GTAAACA |
| Charlie26a | FOXK2 | 268 | 274 | + | 12.47 | GTAAACA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
