Charlie26a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000103 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 325 |
| Kimura value | 28.01 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie26a subfamily (non-autonomous) |
| Comment | 14 bp TIR. |
| Sequence |
CAGTGATGAGCAACCCGCGGCCCGCCCGGCTTCGCGATACGGCCCGCGATCTAATTTCAGGATGAAAGATTAGAAAGCTGCCTCCGTGTTGCTACTTCTCAAATATGCCCAGATATTAACATTTTAGTGGCTAAAAAGCAGTGCCAATTTTCTCATTGACATTCTTCTATTCAATAAAGTAGGTAATCTAAGTTGTAAGAATATACATTTTCCCCCATGGGACTCAATAAAGCTATTTTCATTTTGAATGAAAAAAAAATGCGGCCCGTAAACATTTTTATTTTTCCTGAATTGGCCCTCGTGCAAAAAAAGTTGCTCACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie26a | knrl | 47 | 57 | - | 13.10 | AAATTAGATCG |
| Charlie26a | foxo | 266 | 274 | + | 13.10 | CCGTAAACA |
| Charlie26a | KAN2 | 196 | 205 | - | 13.07 | TATATTCTTA |
| Charlie26a | FOXO6 | 268 | 274 | + | 12.98 | GTAAACA |
| Charlie26a | FOXD1 | 268 | 274 | + | 12.98 | GTAAACA |
| Charlie26a | FOXI1 | 268 | 274 | + | 12.95 | GTAAACA |
| Charlie26a | DOF4.7 | 307 | 315 | - | 12.90 | CAACTTTTT |
| Charlie26a | Ebf4 | 212 | 222 | + | 12.89 | CCCCCATGGGA |
| Charlie26a | EBF1 | 212 | 222 | + | 12.85 | CCCCCATGGGA |
| Charlie26a | STB3 | 247 | 257 | - | 12.79 | TTTTTTTCATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
