Charlie26a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000103 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 325 |
| Kimura value | 28.01 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie26a subfamily (non-autonomous) |
| Comment | 14 bp TIR. |
| Sequence |
CAGTGATGAGCAACCCGCGGCCCGCCCGGCTTCGCGATACGGCCCGCGATCTAATTTCAGGATGAAAGATTAGAAAGCTGCCTCCGTGTTGCTACTTCTCAAATATGCCCAGATATTAACATTTTAGTGGCTAAAAAGCAGTGCCAATTTTCTCATTGACATTCTTCTATTCAATAAAGTAGGTAATCTAAGTTGTAAGAATATACATTTTCCCCCATGGGACTCAATAAAGCTATTTTCATTTTGAATGAAAAAAAAATGCGGCCCGTAAACATTTTTATTTTTCCTGAATTGGCCCTCGTGCAAAAAAAGTTGCTCACCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie26a | FOXF2 | 267 | 275 | + | 13.61 | CGTAAACAT |
| Charlie26a | ZNF384 | 251 | 258 | + | 13.57 | AAAAAAAA |
| Charlie26a | ZNF384 | 252 | 259 | + | 13.57 | AAAAAAAA |
| Charlie26a | MYB41 | 177 | 186 | - | 13.48 | TTACCTACTT |
| Charlie26a | FKH2 | 268 | 274 | + | 13.43 | GTAAACA |
| Charlie26a | rib | 302 | 310 | + | 13.33 | TGCAAAAAA |
| Charlie26a | EBF3 | 214 | 222 | + | 13.28 | CCCATGGGA |
| Charlie26a | FOXG1 | 268 | 275 | + | 13.22 | GTAAACAT |
| Charlie26a | Hmga1 | 274 | 281 | + | 13.22 | ATTTTTAT |
| Charlie26a | EFM | 198 | 206 | + | 13.17 | AGAATATAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
