Charlie26a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000103 |
|---|---|
| TE superfamily | Charlie |
| TE order | DNA |
| Species | Eutheria |
| Length | 325 |
| Kimura value | 28.01 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie26a subfamily (non-autonomous) |
| Comment | 14 bp TIR. |
| Sequence |
CAGTGATGAGCAACCCGCGGCCCGCCCGGCTTCGCGATACGGCCCGCGATCTAATTTCAGGATGAAAGATTAGAAAGCTGCCTCCGTGTTGCTACTTCTCAAATATGCCCAGATATTAACATTTTAGTGGCTAAAAAGCAGTGCCAATTTTCTCATTGACATTCTTCTATTCAATAAAGTAGGTAATCTAAGTTGTAAGAATATACATTTTCCCCCATGGGACTCAATAAAGCTATTTTCATTTTGAATGAAAAAAAAATGCGGCCCGTAAACATTTTTATTTTTCCTGAATTGGCCCTCGTGCAAAAAAAGTTGCTCACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie26a | BEH2 | 296 | 305 | + | 5.97 | CCCTCGTGCA |
| Charlie26a | NFIC | 292 | 306 | - | 1.62 | TTGCACGAGGGCCAA |
| Charlie26a | BCL6B | 124 | 140 | - | -16.04 | TGCTTTTTAGCCACTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
