Charlie22a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000099 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 491 |
| Kimura value | 30.03 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie22a subfamily (non-autonomous) |
| Comment | 16 bp TIR; TIRs identical to MER5A. |
| Sequence |
CAGTGGTTCTCAAACTATGCTCCCACGGAACACTGGTGTTCCGCGAGCTGGACCGAGGTGTTCCGCCGCTAAAATCGAATAATGGCAGTCTTTTCCCAATTCGCAGAAAAAATTAAGTTAATGGATAGAATTTTCTCAATTTTAAGTTTTTCTCCCATAAATTTTTCTTAAACCTTTGGCGCCTGCTACCGCTTGTCTGCTAGCGAGCGCTAGCAGATGACAAAACGAATGAACAAGTAGCAAATGAATATTAACGGAAAAACTCGGAAACAGCCGATCATGCTTAGTTCGACAGCTTGTTTTTTTCATGGACACGTGTGCTCGTGGTTGTGATTTTATATTGCATACATATAATATAGTCATATTTTCTGCTAGTAAAATTGTTCCTAGTTCGTATGATGGAATTAAATATATCAGTATTTCATGGTGTTCCGCAAAGAGCACCATGACTTCCAGGTGCTCTGCCACCTGAACAAGTTTGAGAACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie22a | BAM8 | 312 | 320 | - | 15.42 | CACACGTGT |
| Charlie22a | BEH3 | 311 | 320 | - | 15.14 | CACACGTGTC |
| Charlie22a | BZR2 | 312 | 321 | + | 14.74 | ACACGTGTGC |
| Charlie22a | HEY2 | 311 | 319 | + | 14.57 | GACACGTGT |
| Charlie22a | ZNF417 | 177 | 183 | - | 14.55 | GGCGCCA |
| Charlie22a | BZR1 | 311 | 320 | - | 14.55 | CACACGTGTC |
| Charlie22a | sens | 327 | 336 | - | 14.46 | AAATCACAAC |
| Charlie22a | ABI5 | 311 | 318 | + | 14.41 | GACACGTG |
| Charlie22a | OJ1058_F05.8 | 312 | 319 | + | 14.38 | ACACGTGT |
| Charlie22a | OJ1058_F05.8 | 312 | 319 | - | 14.38 | ACACGTGT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
