Charlie21a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000098 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1213 |
| Kimura value | 27.87 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie21a subfamily (non-autonomous) |
| Comment | 15bp TIRs. |
| Sequence |
CANCATTTCCCAACCGGTGGTTTGTGAACCCCCAGGGGTTCGCGAAGGTGTTCCAGGGGGTTCACGTCGTTAAAGGCGGTAATGGCATCTGTTTCAATTTCTATTTTTAAAAATCAATAAATAAAATAATTATTTAAATATTTTCCCTTTAAAACGGAACAGTTTGAGAGCCTCCGAGTGCGTATCGAGTGAGCATGCGTGGCGGTTAGTGGAGATCAGATGAGCGTGCTCATGACTCAGTCACTCAGTCGGTTTATCACTCAGCTGAACACCGCTAGCCGCCGTGGTGGTTTTGACCATTATACAGTTTTAAATTGTTTTTATTCTTAGTCATATATTGTTTAATTTATACCCATAATGGACCATTGGTTAAAGACAGGAAGCATAAGGAACACTGATGTTGAAATACAACAAGTTAATGAGGAGCATAAAAATGATAATAATTCTGCAAATTCGCCTCAAGATGATCTTCACCAGATCCGTAAGTTGCATTCATCTGATCAAAATTCTTATATAGCACATCAAGATGTCTCTAGTACTTCAAAAACCAATGTTAAAAAGAGAAAATATAGTGACGATTATATCCAATTTGGCTTTTCATTTATTGGGAATAAAGACTATCCACACCCGCAATGTGTTATTTGCGGAGAAGTGCTTGCAAATAGCAGCCTGAAACCTTCTCTCTTATCTCATCATTTAGAAACAAAACACGAAAATTATAAAAATAAACCAGTTGATTTTTTAAAGCGCAAAATGCAAGAATTCCAAACATCAGGTCATGAAAGCAGTTTTTGTCTATTTTTGATGCCGTAACACGTAGTTAAATTTCAATCTACATTTTAATATACATTCGGTCCCCAAACCAAACACGATATAATATGTCATTTTNAAATTTATTTGTCGACAAATCATGCTTTTTCTTACATAATTAATTTAAAGTAAATTAAACAGCATGTGTCACTTGTTAAATGGGAAAAAGTCAAAATTTGTCTTTATATATTATGAATATTATTAAAGATTGTATTAAAATGAACTTTATAATACAATCTTTAATAATATACTGATCTAAAATAAAATATTTTACTTAAAATCACTTCTTTATCATATACCATACAAAAATGACGAAATGATTTTNAAAATTCCTAAGGGGGTTCGCGAGATTATATATTACTGTGAAAGGGGTTCGCGAGTCAAAAAAGGTTGGGAAACGCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie21a | IDD6 | 789 | 804 | + | 14.14 | TTTTTGTCTATTTTTG |
| Charlie21a | DOF3.6 | 545 | 565 | - | 14.11 | TTCTCTTTTTAACATTGGTTT |
| Charlie21a | IDD6 | 789 | 804 | + | 14.07 | TTTTTGTCTATTTTTG |
| Charlie21a | JKD | 985 | 996 | + | 14.06 | ATTTGTCTTTAT |
| Charlie21a | IDD7 | 985 | 998 | - | 14.06 | ATATAAAGACAAAT |
| Charlie21a | jun-1 | 232 | 239 | + | 14.02 | ATGACTCA |
| Charlie21a | Hoxa13 | 601 | 608 | - | 14.02 | CCAATAAA |
| Charlie21a | MEF2A | 101 | 110 | - | 13.93 | TTAAAAATAG |
| Charlie21a | POU4F2 | 922 | 936 | + | 13.91 | TACATAATTAATTTA |
| Charlie21a | WRKY29 | 976 | 984 | + | 13.91 | AAAGTCAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
