Charlie21a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000098 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1213 |
| Kimura value | 27.87 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie21a subfamily (non-autonomous) |
| Comment | 15bp TIRs. |
| Sequence |
CANCATTTCCCAACCGGTGGTTTGTGAACCCCCAGGGGTTCGCGAAGGTGTTCCAGGGGGTTCACGTCGTTAAAGGCGGTAATGGCATCTGTTTCAATTTCTATTTTTAAAAATCAATAAATAAAATAATTATTTAAATATTTTCCCTTTAAAACGGAACAGTTTGAGAGCCTCCGAGTGCGTATCGAGTGAGCATGCGTGGCGGTTAGTGGAGATCAGATGAGCGTGCTCATGACTCAGTCACTCAGTCGGTTTATCACTCAGCTGAACACCGCTAGCCGCCGTGGTGGTTTTGACCATTATACAGTTTTAAATTGTTTTTATTCTTAGTCATATATTGTTTAATTTATACCCATAATGGACCATTGGTTAAAGACAGGAAGCATAAGGAACACTGATGTTGAAATACAACAAGTTAATGAGGAGCATAAAAATGATAATAATTCTGCAAATTCGCCTCAAGATGATCTTCACCAGATCCGTAAGTTGCATTCATCTGATCAAAATTCTTATATAGCACATCAAGATGTCTCTAGTACTTCAAAAACCAATGTTAAAAAGAGAAAATATAGTGACGATTATATCCAATTTGGCTTTTCATTTATTGGGAATAAAGACTATCCACACCCGCAATGTGTTATTTGCGGAGAAGTGCTTGCAAATAGCAGCCTGAAACCTTCTCTCTTATCTCATCATTTAGAAACAAAACACGAAAATTATAAAAATAAACCAGTTGATTTTTTAAAGCGCAAAATGCAAGAATTCCAAACATCAGGTCATGAAAGCAGTTTTTGTCTATTTTTGATGCCGTAACACGTAGTTAAATTTCAATCTACATTTTAATATACATTCGGTCCCCAAACCAAACACGATATAATATGTCATTTTNAAATTTATTTGTCGACAAATCATGCTTTTTCTTACATAATTAATTTAAAGTAAATTAAACAGCATGTGTCACTTGTTAAATGGGAAAAAGTCAAAATTTGTCTTTATATATTATGAATATTATTAAAGATTGTATTAAAATGAACTTTATAATACAATCTTTAATAATATACTGATCTAAAATAAAATATTTTACTTAAAATCACTTCTTTATCATATACCATACAAAAATGACGAAATGATTTTNAAAATTCCTAAGGGGGTTCGCGAGATTATATATTACTGTGAAAGGGGTTCGCGAGTCAAAAAAGGTTGGGAAACGCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie21a | ceh-38 | 109 | 122 | + | 22.56 | AAAAATCAATAAAT |
| Charlie21a | ONECUT3 | 109 | 120 | + | 19.70 | AAAAATCAATAA |
| Charlie21a | tll | 975 | 984 | + | 17.07 | AAAAGTCAAA |
| Charlie21a | ZNF211 | 1103 | 1112 | + | 16.53 | CATATACCAT |
| Charlie21a | WRKY50 | 975 | 983 | - | 16.45 | TTGACTTTT |
| Charlie21a | WRKY45 | 975 | 984 | + | 16.38 | AAAAGTCAAA |
| Charlie21a | blmp-1 | 557 | 567 | + | 15.87 | AAAAGAGAAAA |
| Charlie21a | POU4F3 | 922 | 933 | + | 15.83 | TACATAATTAAT |
| Charlie21a | WRKY71 | 975 | 984 | + | 15.83 | AAAAGTCAAA |
| Charlie21a | POU4F1 | 922 | 933 | + | 15.80 | TACATAATTAAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
