Charlie21a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000098 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1213 |
| Kimura value | 27.87 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie21a subfamily (non-autonomous) |
| Comment | 15bp TIRs. |
| Sequence |
CANCATTTCCCAACCGGTGGTTTGTGAACCCCCAGGGGTTCGCGAAGGTGTTCCAGGGGGTTCACGTCGTTAAAGGCGGTAATGGCATCTGTTTCAATTTCTATTTTTAAAAATCAATAAATAAAATAATTATTTAAATATTTTCCCTTTAAAACGGAACAGTTTGAGAGCCTCCGAGTGCGTATCGAGTGAGCATGCGTGGCGGTTAGTGGAGATCAGATGAGCGTGCTCATGACTCAGTCACTCAGTCGGTTTATCACTCAGCTGAACACCGCTAGCCGCCGTGGTGGTTTTGACCATTATACAGTTTTAAATTGTTTTTATTCTTAGTCATATATTGTTTAATTTATACCCATAATGGACCATTGGTTAAAGACAGGAAGCATAAGGAACACTGATGTTGAAATACAACAAGTTAATGAGGAGCATAAAAATGATAATAATTCTGCAAATTCGCCTCAAGATGATCTTCACCAGATCCGTAAGTTGCATTCATCTGATCAAAATTCTTATATAGCACATCAAGATGTCTCTAGTACTTCAAAAACCAATGTTAAAAAGAGAAAATATAGTGACGATTATATCCAATTTGGCTTTTCATTTATTGGGAATAAAGACTATCCACACCCGCAATGTGTTATTTGCGGAGAAGTGCTTGCAAATAGCAGCCTGAAACCTTCTCTCTTATCTCATCATTTAGAAACAAAACACGAAAATTATAAAAATAAACCAGTTGATTTTTTAAAGCGCAAAATGCAAGAATTCCAAACATCAGGTCATGAAAGCAGTTTTTGTCTATTTTTGATGCCGTAACACGTAGTTAAATTTCAATCTACATTTTAATATACATTCGGTCCCCAAACCAAACACGATATAATATGTCATTTTNAAATTTATTTGTCGACAAATCATGCTTTTTCTTACATAATTAATTTAAAGTAAATTAAACAGCATGTGTCACTTGTTAAATGGGAAAAAGTCAAAATTTGTCTTTATATATTATGAATATTATTAAAGATTGTATTAAAATGAACTTTATAATACAATCTTTAATAATATACTGATCTAAAATAAAATATTTTACTTAAAATCACTTCTTTATCATATACCATACAAAAATGACGAAATGATTTTNAAAATTCCTAAGGGGGTTCGCGAGATTATATATTACTGTGAAAGGGGTTCGCGAGTCAAAAAAGGTTGGGAAACGCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie21a | grh | 727 | 736 | + | 14.55 | AAACCAGTTG |
| Charlie21a | MEF2C | 100 | 110 | - | 14.54 | TTAAAAATAGA |
| Charlie21a | dsf | 975 | 982 | + | 14.52 | AAAAGTCA |
| Charlie21a | MEF2C | 795 | 805 | - | 14.51 | TCAAAAATAGA |
| Charlie21a | CIN5 | 920 | 929 | + | 14.47 | CTTACATAAT |
| Charlie21a | WRKY3 | 975 | 985 | + | 14.42 | AAAAGTCAAAA |
| Charlie21a | ERF15 | 277 | 284 | + | 14.40 | AGCCGCCG |
| Charlie21a | Trl | 678 | 686 | - | 14.34 | AAGAGAGAA |
| Charlie21a | DOF3.2 | 967 | 982 | - | 14.21 | TGACTTTTTCCCATTT |
| Charlie21a | WRKY8 | 975 | 985 | + | 14.14 | AAAAGTCAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
