Charlie21a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000098 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 1213 |
| Kimura value | 27.87 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie21a subfamily (non-autonomous) |
| Comment | 15bp TIRs. |
| Sequence |
CANCATTTCCCAACCGGTGGTTTGTGAACCCCCAGGGGTTCGCGAAGGTGTTCCAGGGGGTTCACGTCGTTAAAGGCGGTAATGGCATCTGTTTCAATTTCTATTTTTAAAAATCAATAAATAAAATAATTATTTAAATATTTTCCCTTTAAAACGGAACAGTTTGAGAGCCTCCGAGTGCGTATCGAGTGAGCATGCGTGGCGGTTAGTGGAGATCAGATGAGCGTGCTCATGACTCAGTCACTCAGTCGGTTTATCACTCAGCTGAACACCGCTAGCCGCCGTGGTGGTTTTGACCATTATACAGTTTTAAATTGTTTTTATTCTTAGTCATATATTGTTTAATTTATACCCATAATGGACCATTGGTTAAAGACAGGAAGCATAAGGAACACTGATGTTGAAATACAACAAGTTAATGAGGAGCATAAAAATGATAATAATTCTGCAAATTCGCCTCAAGATGATCTTCACCAGATCCGTAAGTTGCATTCATCTGATCAAAATTCTTATATAGCACATCAAGATGTCTCTAGTACTTCAAAAACCAATGTTAAAAAGAGAAAATATAGTGACGATTATATCCAATTTGGCTTTTCATTTATTGGGAATAAAGACTATCCACACCCGCAATGTGTTATTTGCGGAGAAGTGCTTGCAAATAGCAGCCTGAAACCTTCTCTCTTATCTCATCATTTAGAAACAAAACACGAAAATTATAAAAATAAACCAGTTGATTTTTTAAAGCGCAAAATGCAAGAATTCCAAACATCAGGTCATGAAAGCAGTTTTTGTCTATTTTTGATGCCGTAACACGTAGTTAAATTTCAATCTACATTTTAATATACATTCGGTCCCCAAACCAAACACGATATAATATGTCATTTTNAAATTTATTTGTCGACAAATCATGCTTTTTCTTACATAATTAATTTAAAGTAAATTAAACAGCATGTGTCACTTGTTAAATGGGAAAAAGTCAAAATTTGTCTTTATATATTATGAATATTATTAAAGATTGTATTAAAATGAACTTTATAATACAATCTTTAATAATATACTGATCTAAAATAAAATATTTTACTTAAAATCACTTCTTTATCATATACCATACAAAAATGACGAAATGATTTTNAAAATTCCTAAGGGGGTTCGCGAGATTATATATTACTGTGAAAGGGGTTCGCGAGTCAAAAAAGGTTGGGAAACGCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie21a | WRKY59 | 975 | 984 | + | 15.63 | AAAAGTCAAA |
| Charlie21a | ONECUT1 | 111 | 119 | + | 15.50 | AAATCAATA |
| Charlie21a | DOF5.1 | 556 | 574 | + | 15.42 | AAAAAGAGAAAATATAGTG |
| Charlie21a | ETV2::FOXI1 | 374 | 384 | + | 15.28 | AGACAGGAAGC |
| Charlie21a | DOF5.8 | 556 | 574 | - | 14.86 | CACTATATTTTCTCTTTTT |
| Charlie21a | ERF::FOXO1 | 372 | 383 | + | 14.79 | AAAGACAGGAAG |
| Charlie21a | LFY | 357 | 375 | + | 14.77 | AATGGACCATTGGTTAAAG |
| Charlie21a | LFY | 357 | 375 | - | 14.77 | CTTTAACCAATGGTCCATT |
| Charlie21a | AGL27 | 97 | 110 | + | 14.75 | ATTTCTATTTTTAA |
| Charlie21a | Nr2e1 | 975 | 983 | + | 14.59 | AAAAGTCAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
