Charlie19a
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000096 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 386 |
| Kimura value | 31.34 |
| Tau index | 0.8811 |
| Description | hAT-Charlie DNA transposon, Charlie19a subfamily (non-autonomous) |
| Comment | 16 bp TIRs. |
| Sequence |
CAGTGGTTCCCAACCTGGGGTCCCCGGACCCTAGGGGTCCNTGAAGGTAGTAATGGGGGTCTNCGAGCTATTTTCAATATTTCAAAAAGCCTAACGGAAATCGTACATTTACCCGCGATAAGGCTGCACAGGCTAACTAAAACGTCAAGTTTCTTTGCTTTTGGCTGGAATTATATCAACTCAGTGTGGTAACACTGGTTATCTCATGCTGATCAGAAGCTCTGATTGGCAGTTATATATGTCTTTGATTAATAAAAAATGGGGAAAAAATNAATTATTACTTAATAAATGCAGTTTGTTTGGTAGACAAAATCTTTCAAAACATGGGGTCCATGGGGGAAAATAATAAAAGGGGTCCTTGGTGGTGAAAAGGTTGGGAACCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie19a | TCP14 | 367 | 384 | + | -1.55 | GAAAAGGTTGGGAACCAC |
| Charlie19a | E2F7 | 108 | 121 | + | -2.23 | TTTACCCGCGATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
