Charlie17
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000092 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 2916 |
| Kimura value | 25.59 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie17 subfamily |
| Comment | Charlie17 TSD is 'CTCTAGAG'. |
| Sequence |
CAGAGCTTCCCAACCGGTGTGCCACGAATGGGTTACAGGTGTGCCGCGAGATACTGATGGTTGTAAATTTTTTATAGTGATAAAAATTTAAAACCATTTTTTAAACCATTCAAAAATTTACAACAGTTGAAATTATATTTGAACACTATTTGATATGGCTCCCTCTGTAAACTTCCTGAATTCAGTAATTATTATTTTGGCGCATAAGACTTTATGCGTAGCACCCGCCGCCAGAGAGCGCTCTGTAGCGGCTATACCACGTAGCACCTNCCCCTGACCTTCCCGTTGAATCATCCCCTAGTCTGATTATTACTTTAGTCGCGATTCGTTTTATCATCAGTGNNAAGTTCTTTGTNTTCGTGNATGTAAAATATTTAGTTTTNCTTTCGATTTAATTTGCTCTTATTTTTCACANTTTTTTTCTACTAACGTAGAAGGTATGTATGATTATTNTTTAATTATTATTAAATAATTGAACATAATTTAATTAAATCGATTCATTAAAGGGGACTATAGGCCTTTACGGCTTCAGAAAATCGATTTTTCAAAATATTTTTGATCATACATGAGTGTAAGTAATATTTATATTTTGTGAATTTTTCAGAATTTTAATTATTAAATTAAATGAAAATTAATATTTCAATANTTCCTATTTTGCTTACCGCATGCTTAATTTTTCAAATTTTTCGATGCGATTTGTTTTAAAACATTCTTAAGAATGCAGACGACCTAAAAATATATTTTGAAAAATCGATTTTCTGAAGCCATAAAGGCCTACAGTCCCCTTAAGTACTTTATATTTAAATAGATTTAATTTTTACAGATATTTATTTTCCCACCATAATGGACAACTTTTTGATTAAAGCTGGAAAGTCATCAGATTCACAAGACAAACACAGTAGTCCAAAAAAAAAGTTTAAGTCACTAATTAGGCAATATAATGAGGATTATCTCAAATTTGGATTCGTGTGCCCCGATAATTCTTCTCTTCCTCAGCCTAAATGTCTTATTTGCATGGAAAAGTTATCAAATGAAGCAATGGTGCCAAGCAAACTACGCCGGCACCTTACCACAAAACATCCATCTTACGCAGAAAAAGATTTGAACTTTTTAAAGCGTCTGCAAGCGCAAAATAAGAAACAAAGTTCTTTTATGAGATCGGTTACAACAGTATCAGATCGAGCTCAAGAAGCTAGTTACAAGGTCGCGCAATTAATAGCTAAAGCCAAAATGCCTCACACAATTGCAGAATCGCTCATTTTACCAGCCTGCGTGGAAATTGTCAACACTGTGTTTGGGACCAATGAAGCAAAGGAAATAGAAAAGGTGCCACTTTCGAATAATACTATTAGTAGACGCATTGACGACATGTCAGATGACATAGAGACAACACTAATCCAGAAGATTATTAAATCAAAAAAGTTTTCATTGCAGATTGATGAATCTACAGACGTTAGTAACTGTGCTCAGTTAATAGCACTAGTTAGAATCCCTGAAGAGAAATGCTTGGAAGAACATTATTTGTTCTGCAAAGAAGTACCAAAACAAACTACTGGGGATGAAATATTCAAAGTGGTAAATGAATACTTTGAAACAAATAAGATATTACGGAAACACTGCGTAAGTTTGTGTACTGATGGTNCGGCTGCAATGACAGGAAGGTGTAAAGGCTTTACATCAAGAGTTCGTTCTGAAAACCCTGAGATTCAAGTAATACATTGTTTTATTCACAGAGAAGCTCTCGTATGTAAAAGTTTGCCTGTAGATCTGAATTCCACATTAAATGATGTTATCAAAATGGTGAATCTAATAAAATCCAAGCCGCTACAGTCCCGTCTGTTTTCAGCTTTATGCGAAGAAATGGGATCAGAATACCACTCTCTGCTGTTTCATACCGAAGTGCGTTGGCTGTCCAAAGGAAGAGTTTTGTCAAGAGTTTATGAGCTAAAAGAAGAAATTGAAAATTANTTTGTGAATGATTCTCACTTTGCAGATTTGTTGAAGGATAGTTATTGGCTTCAAAAAATGGCTTACTTAACTGACATTTTTGAGCACCTGAATGAACTTAATTGAAAATTGCAAGGACCGCGTGAAAATATATTAACGTGTACTGACAAAGTTTATGGATTCAAAGCAAAAATTCAACTTTGGAAAAGTGAGGTTAAAAATGGTTCACTAGTGATGTTTAGTCGGTGTTATAATTTGAATCCTAAAGAAGAATTATTAAGACTAGTAGAGCAACATCTGTGTATGCTTGAGGAAAAGCTTCATCATTATTTTGAAATACTTGATATGAAAAAGTTCGATTGGATTCGAAATCCATTCGCATTATCACAAGAAATTTCAACATTACATTTGTCAATGAAAGAAAAGGAAGAGCTGTTAGATTTAAAGAATGATCACACCCTTGAAGTACAATTTAAAGAGATCGAATTATCCGAATTCTGGTTAATGGCGAGAAAGGAGTTTCCGTCAATCGGAGAAAAAGCGATAAATACTCTTCTGCCATTTGCTACCACCTACTTGTGCGAACAAAGTTTCTCGTCGATGGTGACTATCAAGAATTTGAAGAGATCATCATTAAAAAGTCTTGATCAGGAATTGCGTGTAGCCATTTCAAGCATAAAACCTGATATNAAAAAGTTATGTTCACGGAAGCAAGCTCAAGTTTCTCATTAAAAATTTTGAAAATATTTTATTTGGAAGTTTTATACAAATTCAATATTTAATATCTTCCCTAATACTTTGTATTTTATTTTTCTTATCATAATTATATAATATAAAGAAAATGTAATGAATTTTTTCACCAAGCCCCATATAGACGCCCCCAAATCCCCTCCAGTTTACCCCAGTGTGCCGTACAAATATTATCATTTTCTATGTGTGCCATGACGTGAAAAAGGTTGGGAAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie17 | IG1 | 225 | 233 | + | 15.50 | CCGCCGCCA |
| Charlie17 | DOF5.1 | 1946 | 1964 | + | 15.48 | TAAAAGAAGAAATTGAAAA |
| Charlie17 | STB3 | 2798 | 2808 | + | 15.48 | ATTTTTTCACC |
| Charlie17 | ZNF75A | 829 | 840 | + | 15.45 | TATTTTCCCACC |
| Charlie17 | SOL1 | 1100 | 1114 | - | 15.39 | TTAAAAAGTTCAAAT |
| Charlie17 | Zm00001d049364 | 222 | 232 | + | 15.34 | CACCCGCCGCC |
| Charlie17 | ceh-28 | 534 | 543 | + | 15.27 | AAATCGATTT |
| Charlie17 | ceh-28 | 534 | 543 | - | 15.27 | AAATCGATTT |
| Charlie17 | ceh-28 | 748 | 757 | + | 15.27 | AAATCGATTT |
| Charlie17 | ceh-28 | 748 | 757 | - | 15.27 | AAATCGATTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
