Charlie17
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000092 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 2916 |
| Kimura value | 25.59 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie17 subfamily |
| Comment | Charlie17 TSD is 'CTCTAGAG'. |
| Sequence |
CAGAGCTTCCCAACCGGTGTGCCACGAATGGGTTACAGGTGTGCCGCGAGATACTGATGGTTGTAAATTTTTTATAGTGATAAAAATTTAAAACCATTTTTTAAACCATTCAAAAATTTACAACAGTTGAAATTATATTTGAACACTATTTGATATGGCTCCCTCTGTAAACTTCCTGAATTCAGTAATTATTATTTTGGCGCATAAGACTTTATGCGTAGCACCCGCCGCCAGAGAGCGCTCTGTAGCGGCTATACCACGTAGCACCTNCCCCTGACCTTCCCGTTGAATCATCCCCTAGTCTGATTATTACTTTAGTCGCGATTCGTTTTATCATCAGTGNNAAGTTCTTTGTNTTCGTGNATGTAAAATATTTAGTTTTNCTTTCGATTTAATTTGCTCTTATTTTTCACANTTTTTTTCTACTAACGTAGAAGGTATGTATGATTATTNTTTAATTATTATTAAATAATTGAACATAATTTAATTAAATCGATTCATTAAAGGGGACTATAGGCCTTTACGGCTTCAGAAAATCGATTTTTCAAAATATTTTTGATCATACATGAGTGTAAGTAATATTTATATTTTGTGAATTTTTCAGAATTTTAATTATTAAATTAAATGAAAATTAATATTTCAATANTTCCTATTTTGCTTACCGCATGCTTAATTTTTCAAATTTTTCGATGCGATTTGTTTTAAAACATTCTTAAGAATGCAGACGACCTAAAAATATATTTTGAAAAATCGATTTTCTGAAGCCATAAAGGCCTACAGTCCCCTTAAGTACTTTATATTTAAATAGATTTAATTTTTACAGATATTTATTTTCCCACCATAATGGACAACTTTTTGATTAAAGCTGGAAAGTCATCAGATTCACAAGACAAACACAGTAGTCCAAAAAAAAAGTTTAAGTCACTAATTAGGCAATATAATGAGGATTATCTCAAATTTGGATTCGTGTGCCCCGATAATTCTTCTCTTCCTCAGCCTAAATGTCTTATTTGCATGGAAAAGTTATCAAATGAAGCAATGGTGCCAAGCAAACTACGCCGGCACCTTACCACAAAACATCCATCTTACGCAGAAAAAGATTTGAACTTTTTAAAGCGTCTGCAAGCGCAAAATAAGAAACAAAGTTCTTTTATGAGATCGGTTACAACAGTATCAGATCGAGCTCAAGAAGCTAGTTACAAGGTCGCGCAATTAATAGCTAAAGCCAAAATGCCTCACACAATTGCAGAATCGCTCATTTTACCAGCCTGCGTGGAAATTGTCAACACTGTGTTTGGGACCAATGAAGCAAAGGAAATAGAAAAGGTGCCACTTTCGAATAATACTATTAGTAGACGCATTGACGACATGTCAGATGACATAGAGACAACACTAATCCAGAAGATTATTAAATCAAAAAAGTTTTCATTGCAGATTGATGAATCTACAGACGTTAGTAACTGTGCTCAGTTAATAGCACTAGTTAGAATCCCTGAAGAGAAATGCTTGGAAGAACATTATTTGTTCTGCAAAGAAGTACCAAAACAAACTACTGGGGATGAAATATTCAAAGTGGTAAATGAATACTTTGAAACAAATAAGATATTACGGAAACACTGCGTAAGTTTGTGTACTGATGGTNCGGCTGCAATGACAGGAAGGTGTAAAGGCTTTACATCAAGAGTTCGTTCTGAAAACCCTGAGATTCAAGTAATACATTGTTTTATTCACAGAGAAGCTCTCGTATGTAAAAGTTTGCCTGTAGATCTGAATTCCACATTAAATGATGTTATCAAAATGGTGAATCTAATAAAATCCAAGCCGCTACAGTCCCGTCTGTTTTCAGCTTTATGCGAAGAAATGGGATCAGAATACCACTCTCTGCTGTTTCATACCGAAGTGCGTTGGCTGTCCAAAGGAAGAGTTTTGTCAAGAGTTTATGAGCTAAAAGAAGAAATTGAAAATTANTTTGTGAATGATTCTCACTTTGCAGATTTGTTGAAGGATAGTTATTGGCTTCAAAAAATGGCTTACTTAACTGACATTTTTGAGCACCTGAATGAACTTAATTGAAAATTGCAAGGACCGCGTGAAAATATATTAACGTGTACTGACAAAGTTTATGGATTCAAAGCAAAAATTCAACTTTGGAAAAGTGAGGTTAAAAATGGTTCACTAGTGATGTTTAGTCGGTGTTATAATTTGAATCCTAAAGAAGAATTATTAAGACTAGTAGAGCAACATCTGTGTATGCTTGAGGAAAAGCTTCATCATTATTTTGAAATACTTGATATGAAAAAGTTCGATTGGATTCGAAATCCATTCGCATTATCACAAGAAATTTCAACATTACATTTGTCAATGAAAGAAAAGGAAGAGCTGTTAGATTTAAAGAATGATCACACCCTTGAAGTACAATTTAAAGAGATCGAATTATCCGAATTCTGGTTAATGGCGAGAAAGGAGTTTCCGTCAATCGGAGAAAAAGCGATAAATACTCTTCTGCCATTTGCTACCACCTACTTGTGCGAACAAAGTTTCTCGTCGATGGTGACTATCAAGAATTTGAAGAGATCATCATTAAAAAGTCTTGATCAGGAATTGCGTGTAGCCATTTCAAGCATAAAACCTGATATNAAAAAGTTATGTTCACGGAAGCAAGCTCAAGTTTCTCATTAAAAATTTTGAAAATATTTTATTTGGAAGTTTTATACAAATTCAATATTTAATATCTTCCCTAATACTTTGTATTTTATTTTTCTTATCATAATTATATAATATAAAGAAAATGTAATGAATTTTTTCACCAAGCCCCATATAGACGCCCCCAAATCCCCTCCAGTTTACCCCAGTGTGCCGTACAAATATTATCATTTTCTATGTGTGCCATGACGTGAAAAAGGTTGGGAAGCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie17 | TCX6 | 109 | 123 | - | 18.34 | TTGTAAATTTTTGAA |
| Charlie17 | TCX6 | 61 | 75 | + | 17.78 | TTGTAAATTTTTTAT |
| Charlie17 | PROP1 | 480 | 490 | + | 17.61 | TAATTTAATTA |
| Charlie17 | ATHB-15 | 2268 | 2280 | - | 17.40 | AAAATAATGATGA |
| Charlie17 | TSO1 | 78 | 92 | + | 17.40 | TGATAAAAATTTAAA |
| Charlie17 | PHOX2B | 479 | 490 | - | 17.23 | TAATTAAATTAT |
| Charlie17 | PROP1 | 480 | 490 | - | 17.12 | TAATTAAATTA |
| Charlie17 | YY1-2 | 836 | 848 | - | 16.73 | TCCATTATGGTGG |
| Charlie17 | TCX6 | 2676 | 2690 | - | 16.64 | TTTCAAAATTTTTAA |
| Charlie17 | ERF082 | 225 | 233 | + | 16.26 | CCGCCGCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
