Charlie17
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000092 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 2916 |
| Kimura value | 25.59 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie17 subfamily |
| Comment | Charlie17 TSD is 'CTCTAGAG'. |
| Sequence |
CAGAGCTTCCCAACCGGTGTGCCACGAATGGGTTACAGGTGTGCCGCGAGATACTGATGGTTGTAAATTTTTTATAGTGATAAAAATTTAAAACCATTTTTTAAACCATTCAAAAATTTACAACAGTTGAAATTATATTTGAACACTATTTGATATGGCTCCCTCTGTAAACTTCCTGAATTCAGTAATTATTATTTTGGCGCATAAGACTTTATGCGTAGCACCCGCCGCCAGAGAGCGCTCTGTAGCGGCTATACCACGTAGCACCTNCCCCTGACCTTCCCGTTGAATCATCCCCTAGTCTGATTATTACTTTAGTCGCGATTCGTTTTATCATCAGTGNNAAGTTCTTTGTNTTCGTGNATGTAAAATATTTAGTTTTNCTTTCGATTTAATTTGCTCTTATTTTTCACANTTTTTTTCTACTAACGTAGAAGGTATGTATGATTATTNTTTAATTATTATTAAATAATTGAACATAATTTAATTAAATCGATTCATTAAAGGGGACTATAGGCCTTTACGGCTTCAGAAAATCGATTTTTCAAAATATTTTTGATCATACATGAGTGTAAGTAATATTTATATTTTGTGAATTTTTCAGAATTTTAATTATTAAATTAAATGAAAATTAATATTTCAATANTTCCTATTTTGCTTACCGCATGCTTAATTTTTCAAATTTTTCGATGCGATTTGTTTTAAAACATTCTTAAGAATGCAGACGACCTAAAAATATATTTTGAAAAATCGATTTTCTGAAGCCATAAAGGCCTACAGTCCCCTTAAGTACTTTATATTTAAATAGATTTAATTTTTACAGATATTTATTTTCCCACCATAATGGACAACTTTTTGATTAAAGCTGGAAAGTCATCAGATTCACAAGACAAACACAGTAGTCCAAAAAAAAAGTTTAAGTCACTAATTAGGCAATATAATGAGGATTATCTCAAATTTGGATTCGTGTGCCCCGATAATTCTTCTCTTCCTCAGCCTAAATGTCTTATTTGCATGGAAAAGTTATCAAATGAAGCAATGGTGCCAAGCAAACTACGCCGGCACCTTACCACAAAACATCCATCTTACGCAGAAAAAGATTTGAACTTTTTAAAGCGTCTGCAAGCGCAAAATAAGAAACAAAGTTCTTTTATGAGATCGGTTACAACAGTATCAGATCGAGCTCAAGAAGCTAGTTACAAGGTCGCGCAATTAATAGCTAAAGCCAAAATGCCTCACACAATTGCAGAATCGCTCATTTTACCAGCCTGCGTGGAAATTGTCAACACTGTGTTTGGGACCAATGAAGCAAAGGAAATAGAAAAGGTGCCACTTTCGAATAATACTATTAGTAGACGCATTGACGACATGTCAGATGACATAGAGACAACACTAATCCAGAAGATTATTAAATCAAAAAAGTTTTCATTGCAGATTGATGAATCTACAGACGTTAGTAACTGTGCTCAGTTAATAGCACTAGTTAGAATCCCTGAAGAGAAATGCTTGGAAGAACATTATTTGTTCTGCAAAGAAGTACCAAAACAAACTACTGGGGATGAAATATTCAAAGTGGTAAATGAATACTTTGAAACAAATAAGATATTACGGAAACACTGCGTAAGTTTGTGTACTGATGGTNCGGCTGCAATGACAGGAAGGTGTAAAGGCTTTACATCAAGAGTTCGTTCTGAAAACCCTGAGATTCAAGTAATACATTGTTTTATTCACAGAGAAGCTCTCGTATGTAAAAGTTTGCCTGTAGATCTGAATTCCACATTAAATGATGTTATCAAAATGGTGAATCTAATAAAATCCAAGCCGCTACAGTCCCGTCTGTTTTCAGCTTTATGCGAAGAAATGGGATCAGAATACCACTCTCTGCTGTTTCATACCGAAGTGCGTTGGCTGTCCAAAGGAAGAGTTTTGTCAAGAGTTTATGAGCTAAAAGAAGAAATTGAAAATTANTTTGTGAATGATTCTCACTTTGCAGATTTGTTGAAGGATAGTTATTGGCTTCAAAAAATGGCTTACTTAACTGACATTTTTGAGCACCTGAATGAACTTAATTGAAAATTGCAAGGACCGCGTGAAAATATATTAACGTGTACTGACAAAGTTTATGGATTCAAAGCAAAAATTCAACTTTGGAAAAGTGAGGTTAAAAATGGTTCACTAGTGATGTTTAGTCGGTGTTATAATTTGAATCCTAAAGAAGAATTATTAAGACTAGTAGAGCAACATCTGTGTATGCTTGAGGAAAAGCTTCATCATTATTTTGAAATACTTGATATGAAAAAGTTCGATTGGATTCGAAATCCATTCGCATTATCACAAGAAATTTCAACATTACATTTGTCAATGAAAGAAAAGGAAGAGCTGTTAGATTTAAAGAATGATCACACCCTTGAAGTACAATTTAAAGAGATCGAATTATCCGAATTCTGGTTAATGGCGAGAAAGGAGTTTCCGTCAATCGGAGAAAAAGCGATAAATACTCTTCTGCCATTTGCTACCACCTACTTGTGCGAACAAAGTTTCTCGTCGATGGTGACTATCAAGAATTTGAAGAGATCATCATTAAAAAGTCTTGATCAGGAATTGCGTGTAGCCATTTCAAGCATAAAACCTGATATNAAAAAGTTATGTTCACGGAAGCAAGCTCAAGTTTCTCATTAAAAATTTTGAAAATATTTTATTTGGAAGTTTTATACAAATTCAATATTTAATATCTTCCCTAATACTTTGTATTTTATTTTTCTTATCATAATTATATAATATAAAGAAAATGTAATGAATTTTTTCACCAAGCCCCATATAGACGCCCCCAAATCCCCTCCAGTTTACCCCAGTGTGCCGTACAAATATTATCATTTTCTATGTGTGCCATGACGTGAAAAAGGTTGGGAAGCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie17 | SOL1 | 2676 | 2690 | + | 16.19 | TTAAAAATTTTGAAA |
| Charlie17 | ERF4 | 225 | 233 | + | 16.16 | CCGCCGCCA |
| Charlie17 | ERF112 | 225 | 233 | + | 16.11 | CCGCCGCCA |
| Charlie17 | ZHD9 | 917 | 931 | + | 16.07 | TTAAGTCACTAATTA |
| Charlie17 | SOL1 | 61 | 75 | - | 16.06 | ATAAAAAATTTACAA |
| Charlie17 | PHOX2A | 480 | 490 | + | 15.96 | TAATTTAATTA |
| Charlie17 | SOL1 | 79 | 93 | + | 15.72 | GATAAAAATTTAAAA |
| Charlie17 | TCX6 | 79 | 93 | - | 15.72 | TTTTAAATTTTTATC |
| Charlie17 | ERF118 | 225 | 232 | + | 15.56 | CCGCCGCC |
| Charlie17 | TCX6 | 1100 | 1114 | + | 15.54 | ATTTGAACTTTTTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
