Charlie17
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000092 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 2916 |
| Kimura value | 25.59 |
| Tau index | 0.0000 |
| Description | hAT-Charlie DNA transposon, Charlie17 subfamily |
| Comment | Charlie17 TSD is 'CTCTAGAG'. |
| Sequence |
CAGAGCTTCCCAACCGGTGTGCCACGAATGGGTTACAGGTGTGCCGCGAGATACTGATGGTTGTAAATTTTTTATAGTGATAAAAATTTAAAACCATTTTTTAAACCATTCAAAAATTTACAACAGTTGAAATTATATTTGAACACTATTTGATATGGCTCCCTCTGTAAACTTCCTGAATTCAGTAATTATTATTTTGGCGCATAAGACTTTATGCGTAGCACCCGCCGCCAGAGAGCGCTCTGTAGCGGCTATACCACGTAGCACCTNCCCCTGACCTTCCCGTTGAATCATCCCCTAGTCTGATTATTACTTTAGTCGCGATTCGTTTTATCATCAGTGNNAAGTTCTTTGTNTTCGTGNATGTAAAATATTTAGTTTTNCTTTCGATTTAATTTGCTCTTATTTTTCACANTTTTTTTCTACTAACGTAGAAGGTATGTATGATTATTNTTTAATTATTATTAAATAATTGAACATAATTTAATTAAATCGATTCATTAAAGGGGACTATAGGCCTTTACGGCTTCAGAAAATCGATTTTTCAAAATATTTTTGATCATACATGAGTGTAAGTAATATTTATATTTTGTGAATTTTTCAGAATTTTAATTATTAAATTAAATGAAAATTAATATTTCAATANTTCCTATTTTGCTTACCGCATGCTTAATTTTTCAAATTTTTCGATGCGATTTGTTTTAAAACATTCTTAAGAATGCAGACGACCTAAAAATATATTTTGAAAAATCGATTTTCTGAAGCCATAAAGGCCTACAGTCCCCTTAAGTACTTTATATTTAAATAGATTTAATTTTTACAGATATTTATTTTCCCACCATAATGGACAACTTTTTGATTAAAGCTGGAAAGTCATCAGATTCACAAGACAAACACAGTAGTCCAAAAAAAAAGTTTAAGTCACTAATTAGGCAATATAATGAGGATTATCTCAAATTTGGATTCGTGTGCCCCGATAATTCTTCTCTTCCTCAGCCTAAATGTCTTATTTGCATGGAAAAGTTATCAAATGAAGCAATGGTGCCAAGCAAACTACGCCGGCACCTTACCACAAAACATCCATCTTACGCAGAAAAAGATTTGAACTTTTTAAAGCGTCTGCAAGCGCAAAATAAGAAACAAAGTTCTTTTATGAGATCGGTTACAACAGTATCAGATCGAGCTCAAGAAGCTAGTTACAAGGTCGCGCAATTAATAGCTAAAGCCAAAATGCCTCACACAATTGCAGAATCGCTCATTTTACCAGCCTGCGTGGAAATTGTCAACACTGTGTTTGGGACCAATGAAGCAAAGGAAATAGAAAAGGTGCCACTTTCGAATAATACTATTAGTAGACGCATTGACGACATGTCAGATGACATAGAGACAACACTAATCCAGAAGATTATTAAATCAAAAAAGTTTTCATTGCAGATTGATGAATCTACAGACGTTAGTAACTGTGCTCAGTTAATAGCACTAGTTAGAATCCCTGAAGAGAAATGCTTGGAAGAACATTATTTGTTCTGCAAAGAAGTACCAAAACAAACTACTGGGGATGAAATATTCAAAGTGGTAAATGAATACTTTGAAACAAATAAGATATTACGGAAACACTGCGTAAGTTTGTGTACTGATGGTNCGGCTGCAATGACAGGAAGGTGTAAAGGCTTTACATCAAGAGTTCGTTCTGAAAACCCTGAGATTCAAGTAATACATTGTTTTATTCACAGAGAAGCTCTCGTATGTAAAAGTTTGCCTGTAGATCTGAATTCCACATTAAATGATGTTATCAAAATGGTGAATCTAATAAAATCCAAGCCGCTACAGTCCCGTCTGTTTTCAGCTTTATGCGAAGAAATGGGATCAGAATACCACTCTCTGCTGTTTCATACCGAAGTGCGTTGGCTGTCCAAAGGAAGAGTTTTGTCAAGAGTTTATGAGCTAAAAGAAGAAATTGAAAATTANTTTGTGAATGATTCTCACTTTGCAGATTTGTTGAAGGATAGTTATTGGCTTCAAAAAATGGCTTACTTAACTGACATTTTTGAGCACCTGAATGAACTTAATTGAAAATTGCAAGGACCGCGTGAAAATATATTAACGTGTACTGACAAAGTTTATGGATTCAAAGCAAAAATTCAACTTTGGAAAAGTGAGGTTAAAAATGGTTCACTAGTGATGTTTAGTCGGTGTTATAATTTGAATCCTAAAGAAGAATTATTAAGACTAGTAGAGCAACATCTGTGTATGCTTGAGGAAAAGCTTCATCATTATTTTGAAATACTTGATATGAAAAAGTTCGATTGGATTCGAAATCCATTCGCATTATCACAAGAAATTTCAACATTACATTTGTCAATGAAAGAAAAGGAAGAGCTGTTAGATTTAAAGAATGATCACACCCTTGAAGTACAATTTAAAGAGATCGAATTATCCGAATTCTGGTTAATGGCGAGAAAGGAGTTTCCGTCAATCGGAGAAAAAGCGATAAATACTCTTCTGCCATTTGCTACCACCTACTTGTGCGAACAAAGTTTCTCGTCGATGGTGACTATCAAGAATTTGAAGAGATCATCATTAAAAAGTCTTGATCAGGAATTGCGTGTAGCCATTTCAAGCATAAAACCTGATATNAAAAAGTTATGTTCACGGAAGCAAGCTCAAGTTTCTCATTAAAAATTTTGAAAATATTTTATTTGGAAGTTTTATACAAATTCAATATTTAATATCTTCCCTAATACTTTGTATTTTATTTTTCTTATCATAATTATATAATATAAAGAAAATGTAATGAATTTTTTCACCAAGCCCCATATAGACGCCCCCAAATCCCCTCCAGTTTACCCCAGTGTGCCGTACAAATATTATCATTTTCTATGTGTGCCATGACGTGAAAAAGGTTGGGAAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie17 | BPC5 | 1933 | 1962 | + | -43.77 | AGAGTTTATGAGCTAAAAGAAGAAATTGAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
