Charlie16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001313 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 3051 |
| Kimura value | 30.38 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie16 subfamily |
| Comment | Autonomous Charlie hAT transposon. ORF ~759-2792. 16 bp TIRs. |
| Sequence |
CAGTGCTTCTCAAACTGGGGTACGCGTACCCCCGGGGGTATGCAGTGGCAGAGGGGCAGTACGAAGCCACAGGATAAACATGGCGCATCTTCCTGGAGCGTCAATTTTACTCGAAGATTTGGGGGAAANAAGTTTTGAATTTTTGCGCTCTTAAAAGGTTTTGTCACATGCATGCGCAAGCAAAATCAGCAGAATCCTACTTTTCCATGTCGGCCAATCTCGTGTTTTTTCGTGAAAGCCCAGAGAGCAGAAAATTTTTATGTGCAGTGAGTGATTGGAAAATTTGGTACTTTTGTGTTATCGGGGAACCCGGTGGTATTAGCGCTGCAGTCGCGTCAAAGTGAACAGAGCGCGCANCGGCANTAAAACGGATTATGCCANNTCCNTGNCCNCAGTGGGGGCTGNTNATGCCANNGCAGAAGAGCNGGAGCGTGTGATTTCTCGGCAAGTCCGNGGAGGCCTACACAGCTAGCTTTTTGAAAAACGAGTTTGTCACCTTATAAATGCGGTTNTTTTTNACTTTTGATTACACAAAAANNCATTGGCTCCCACAAATCAGTTCAACTTCCTGCCGCAATTGCGCTCGATCAAATGTTTTGTTTACAAACATGCGACTACGCTTAGTTCTACTTCCCGCCACAGTGAGTTCCCCGATAACACAAAAGTACCGAAAATTCTGGNTTTTGTGATTTTAGTGTCATTCTTCATTTACCTTTTTAAAGTGTAATAATTTTAAAATTATATTTTCAACTGGGAACATGGATCGGTGGTTAAAAACAGGAAGTTTGAAGCGTAAGCTTGAAACCAGTGAAAATACGCAAGATAATGAGGGAAATTCAGAACAACCTGAAATCATCGAGGGTTGTGACAGACATGGCGTTGTCCCTGAGGCTCCCCACAATGAACTTGACAGTAAAGAAGATGATAGCACTACCCCAACCACAACTAGTGAATCGGTAGTAAGCAGCAGCAGTCAATCTAAAAAGCGTAGGATGTACTTAGATGCTTATTTAAAATATGGGTTTTATTATTGTGGAGATGCAAATGAGCCTAAACCTTGGTGTCTCTTGTGCGAGAAAACCCTGAGCAATAACTGCATGAAACCATCACTCTTGCAGCGACATTTAAAAACCAATCATGCAAATTTTGAAGGAAAATCACCAGAATTTTTTGCAACTAAAAAGAGAGAAGTCTTGGCTAGGAGCAATACAATGAAAAGCACAATCAAACAAGCAAATAAAAAATTGCTTGAAGCTTCCTTCAAGGTCAGTTTCAGAATCGCCTTGGAAGGTGAAGCTCACGTAATAGGAGAAAATTTGGTGAAGCCCTGCGCTGTAGATATGGCCGAATCTGTTTTGGGTCAAAAAGAGGCAGCCAAGCTGAAAAAGGTGCCCTTATCGAATGACACCGTCAAACGACGCATTTTAATGTGCTCAAAAGACATACTTGAACAACTGGTTGAGAGACTGAGGTTAACCCGGTTCTTTACCTTACAGTTGGATGAAAGCACGGACGTTAATGATTTGGCCATTTTATTGGTCTTTGTTCGCTATATTTATAATGATGATGTCTGTGAAGACATGTTAATTTGCAAAGTGCTTGATGGTAAAATAACTGGTGAAGAAATTTTCAACAAGATATGTGAANNTTTTAGCGAGCATGGTATCGACTGGAAAAAATGTACGGACGTGTGCACAGATGGGGCCAAATCTATGACGGGCAAAACTGCGGGAGCGGTAGCCCGCATCAAGGCCATTGCGCACCCTGAATGCACCAGCAGCCACTGCATCATTCACCGAGAACACCTCGCCTCAAAGAGTTTGCCTCTTGATTTTCTCAGTGTGTTCAATGGGGTGGTAAAAATGGTAAATTTTGTAAAAAACAGTGGTTTGAATACTTATCTTTTTAGACAAATTTGTAATGAAATGGGAAGTGACTTTGAAAGCTTGCTCTACTACACAGATGTATGCTGGCTTAGCCAGGAGAAGGTGCTGGTCAGAGTTTTCGAACTCAGGGTTGAATTGTTATTTTTCTTCATGGAGAAAAAAAATATCACGACAAAGGGTAAAAACCTGGATAAGGTGAATGAATTCATTGTTCACCTTAATGATAAAGAGTGGCTCACAAAGTTGGCTTATTTAGCAGATATTTTTTCAAGGCTGAACACTCTCAATCAACAACTGCAAGGCAAAACTGTGAATGTTTTTACTGCACATGACAAGATCGCTGCAATGAAAATGAAGTTTGAGAGTTGGATGAAGAGAGTTGATCGTGGGGACTATGAGTCGTTTGAGACTCTTAGTTCATTTACATGTGATGAAAATTACAGCGTTAGTGGTAAAATAAAGAATAACATCATCAGTCATCTTTCTTCACTGAAAAAGTCCTTTGATGAGTATTTCCCTGAGACAGTAAAAGAGACTGACCAGTGGATCAGAGACCCTTTCAGTCCGCCATATGACACAAGCGACTTGACCTCTCAGCAAGAAGATACACTTATCGAAATTTCCACCAACAGTAGCCTGAAAACGTTGCACCGTACCACCTCTTTGGCAGCATTCTGGGCATCTCTCCTCAGTGATTACCCTGACATAGCTCGTAAAGCAGTGAAAAAACNGTTGCCATTTGTATCCACATATTTATGTGAGTCTGGGTTCTCGAAATATTGTGACACCAAGACAGAGAAGAGAAATTGCCTGGATGCTGAACCTGATATGCGGCGTCAGCTCTCTTCAATTCAGCCCAATTTTCCGAAATTGATAGACTCAATGCAACAGCATCTTGTCCATTAACCAATGAGACAGGTAGGAAATGTTTTCCTTGATGGTAAGTAATTTAAAACATTATTTTTTATATTAAAACAAACACGGATATATTATGGAGTAGAATGCAAAATTCGCATGAATTTTTAAGATAAAACGCGAGACTTCAAAGAAATTTCGCGCTTGTGGCAGGGCTGCTTCGGGCTATGCCCCCAGACCCCCCGGGGGGTACGCATTCACTCTCCTCTGCCGTTAGGGGTACTTCGGTGGAAAAGTTTGAGAAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie16 | LHY | 2144 | 2152 | + | 15.86 | AGATATTTT |
| Charlie16 | Esrrg | 1261 | 1269 | + | 15.85 | TCAAGGTCA |
| Charlie16 | ETV1 | 777 | 785 | + | 15.81 | ACAGGAAGT |
| Charlie16 | ZIC4 | 2980 | 2993 | - | 15.79 | TACCCCCCGGGGGG |
| Charlie16 | ZNF175 | 777 | 785 | + | 15.73 | ACAGGAAGT |
| Charlie16 | E2F8 | 631 | 639 | + | 15.69 | TTCCCGCCA |
| Charlie16 | SPIC | 774 | 786 | + | 15.69 | AAAACAGGAAGTT |
| Charlie16 | HOXB13 | 1531 | 1539 | - | 15.62 | CCAATAAAA |
| Charlie16 | RVE1 | 2144 | 2152 | - | 15.59 | AAAATATCT |
| Charlie16 | DREB1E | 207 | 214 | + | 15.59 | ATGTCGGC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
