Charlie16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001313 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 3051 |
| Kimura value | 30.38 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie16 subfamily |
| Comment | Autonomous Charlie hAT transposon. ORF ~759-2792. 16 bp TIRs. |
| Sequence |
CAGTGCTTCTCAAACTGGGGTACGCGTACCCCCGGGGGTATGCAGTGGCAGAGGGGCAGTACGAAGCCACAGGATAAACATGGCGCATCTTCCTGGAGCGTCAATTTTACTCGAAGATTTGGGGGAAANAAGTTTTGAATTTTTGCGCTCTTAAAAGGTTTTGTCACATGCATGCGCAAGCAAAATCAGCAGAATCCTACTTTTCCATGTCGGCCAATCTCGTGTTTTTTCGTGAAAGCCCAGAGAGCAGAAAATTTTTATGTGCAGTGAGTGATTGGAAAATTTGGTACTTTTGTGTTATCGGGGAACCCGGTGGTATTAGCGCTGCAGTCGCGTCAAAGTGAACAGAGCGCGCANCGGCANTAAAACGGATTATGCCANNTCCNTGNCCNCAGTGGGGGCTGNTNATGCCANNGCAGAAGAGCNGGAGCGTGTGATTTCTCGGCAAGTCCGNGGAGGCCTACACAGCTAGCTTTTTGAAAAACGAGTTTGTCACCTTATAAATGCGGTTNTTTTTNACTTTTGATTACACAAAAANNCATTGGCTCCCACAAATCAGTTCAACTTCCTGCCGCAATTGCGCTCGATCAAATGTTTTGTTTACAAACATGCGACTACGCTTAGTTCTACTTCCCGCCACAGTGAGTTCCCCGATAACACAAAAGTACCGAAAATTCTGGNTTTTGTGATTTTAGTGTCATTCTTCATTTACCTTTTTAAAGTGTAATAATTTTAAAATTATATTTTCAACTGGGAACATGGATCGGTGGTTAAAAACAGGAAGTTTGAAGCGTAAGCTTGAAACCAGTGAAAATACGCAAGATAATGAGGGAAATTCAGAACAACCTGAAATCATCGAGGGTTGTGACAGACATGGCGTTGTCCCTGAGGCTCCCCACAATGAACTTGACAGTAAAGAAGATGATAGCACTACCCCAACCACAACTAGTGAATCGGTAGTAAGCAGCAGCAGTCAATCTAAAAAGCGTAGGATGTACTTAGATGCTTATTTAAAATATGGGTTTTATTATTGTGGAGATGCAAATGAGCCTAAACCTTGGTGTCTCTTGTGCGAGAAAACCCTGAGCAATAACTGCATGAAACCATCACTCTTGCAGCGACATTTAAAAACCAATCATGCAAATTTTGAAGGAAAATCACCAGAATTTTTTGCAACTAAAAAGAGAGAAGTCTTGGCTAGGAGCAATACAATGAAAAGCACAATCAAACAAGCAAATAAAAAATTGCTTGAAGCTTCCTTCAAGGTCAGTTTCAGAATCGCCTTGGAAGGTGAAGCTCACGTAATAGGAGAAAATTTGGTGAAGCCCTGCGCTGTAGATATGGCCGAATCTGTTTTGGGTCAAAAAGAGGCAGCCAAGCTGAAAAAGGTGCCCTTATCGAATGACACCGTCAAACGACGCATTTTAATGTGCTCAAAAGACATACTTGAACAACTGGTTGAGAGACTGAGGTTAACCCGGTTCTTTACCTTACAGTTGGATGAAAGCACGGACGTTAATGATTTGGCCATTTTATTGGTCTTTGTTCGCTATATTTATAATGATGATGTCTGTGAAGACATGTTAATTTGCAAAGTGCTTGATGGTAAAATAACTGGTGAAGAAATTTTCAACAAGATATGTGAANNTTTTAGCGAGCATGGTATCGACTGGAAAAAATGTACGGACGTGTGCACAGATGGGGCCAAATCTATGACGGGCAAAACTGCGGGAGCGGTAGCCCGCATCAAGGCCATTGCGCACCCTGAATGCACCAGCAGCCACTGCATCATTCACCGAGAACACCTCGCCTCAAAGAGTTTGCCTCTTGATTTTCTCAGTGTGTTCAATGGGGTGGTAAAAATGGTAAATTTTGTAAAAAACAGTGGTTTGAATACTTATCTTTTTAGACAAATTTGTAATGAAATGGGAAGTGACTTTGAAAGCTTGCTCTACTACACAGATGTATGCTGGCTTAGCCAGGAGAAGGTGCTGGTCAGAGTTTTCGAACTCAGGGTTGAATTGTTATTTTTCTTCATGGAGAAAAAAAATATCACGACAAAGGGTAAAAACCTGGATAAGGTGAATGAATTCATTGTTCACCTTAATGATAAAGAGTGGCTCACAAAGTTGGCTTATTTAGCAGATATTTTTTCAAGGCTGAACACTCTCAATCAACAACTGCAAGGCAAAACTGTGAATGTTTTTACTGCACATGACAAGATCGCTGCAATGAAAATGAAGTTTGAGAGTTGGATGAAGAGAGTTGATCGTGGGGACTATGAGTCGTTTGAGACTCTTAGTTCATTTACATGTGATGAAAATTACAGCGTTAGTGGTAAAATAAAGAATAACATCATCAGTCATCTTTCTTCACTGAAAAAGTCCTTTGATGAGTATTTCCCTGAGACAGTAAAAGAGACTGACCAGTGGATCAGAGACCCTTTCAGTCCGCCATATGACACAAGCGACTTGACCTCTCAGCAAGAAGATACACTTATCGAAATTTCCACCAACAGTAGCCTGAAAACGTTGCACCGTACCACCTCTTTGGCAGCATTCTGGGCATCTCTCCTCAGTGATTACCCTGACATAGCTCGTAAAGCAGTGAAAAAACNGTTGCCATTTGTATCCACATATTTATGTGAGTCTGGGTTCTCGAAATATTGTGACACCAAGACAGAGAAGAGAAATTGCCTGGATGCTGAACCTGATATGCGGCGTCAGCTCTCTTCAATTCAGCCCAATTTTCCGAAATTGATAGACTCAATGCAACAGCATCTTGTCCATTAACCAATGAGACAGGTAGGAAATGTTTTCCTTGATGGTAAGTAATTTAAAACATTATTTTTTATATTAAAACAAACACGGATATATTATGGAGTAGAATGCAAAATTCGCATGAATTTTTAAGATAAAACGCGAGACTTCAAAGAAATTTCGCGCTTGTGGCAGGGCTGCTTCGGGCTATGCCCCCAGACCCCCCGGGGGGTACGCATTCACTCTCCTCTGCCGTTAGGGGTACTTCGGTGGAAAAGTTTGAGAAGCACTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie16 | ZNF320 | 2966 | 2985 | - | 19.54 | GGGGGGTCTGGGGGCATAGC |
| Charlie16 | FOXO1::ELK1 | 773 | 785 | + | 19.18 | AAAAACAGGAAGT |
| Charlie16 | FOXO1::ELK3 | 773 | 785 | + | 19.17 | AAAAACAGGAAGT |
| Charlie16 | FOXO1::FLI1 | 773 | 785 | + | 19.03 | AAAAACAGGAAGT |
| Charlie16 | FOXO1::ELF1 | 773 | 785 | + | 17.99 | AAAAACAGGAAGT |
| Charlie16 | sug | 2978 | 2989 | + | 17.72 | GACCCCCCGGGG |
| Charlie16 | opa | 2978 | 2989 | + | 17.39 | GACCCCCCGGGG |
| Charlie16 | ETV2::FOXI1 | 775 | 785 | + | 17.31 | AAACAGGAAGT |
| Charlie16 | FOXJ2::ELF1 | 775 | 785 | + | 17.26 | AAACAGGAAGT |
| Charlie16 | ZIC4 | 2978 | 2991 | + | 17.21 | GACCCCCCGGGGGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
