Charlie16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001313 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 3051 |
| Kimura value | 30.38 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie16 subfamily |
| Comment | Autonomous Charlie hAT transposon. ORF ~759-2792. 16 bp TIRs. |
| Sequence |
CAGTGCTTCTCAAACTGGGGTACGCGTACCCCCGGGGGTATGCAGTGGCAGAGGGGCAGTACGAAGCCACAGGATAAACATGGCGCATCTTCCTGGAGCGTCAATTTTACTCGAAGATTTGGGGGAAANAAGTTTTGAATTTTTGCGCTCTTAAAAGGTTTTGTCACATGCATGCGCAAGCAAAATCAGCAGAATCCTACTTTTCCATGTCGGCCAATCTCGTGTTTTTTCGTGAAAGCCCAGAGAGCAGAAAATTTTTATGTGCAGTGAGTGATTGGAAAATTTGGTACTTTTGTGTTATCGGGGAACCCGGTGGTATTAGCGCTGCAGTCGCGTCAAAGTGAACAGAGCGCGCANCGGCANTAAAACGGATTATGCCANNTCCNTGNCCNCAGTGGGGGCTGNTNATGCCANNGCAGAAGAGCNGGAGCGTGTGATTTCTCGGCAAGTCCGNGGAGGCCTACACAGCTAGCTTTTTGAAAAACGAGTTTGTCACCTTATAAATGCGGTTNTTTTTNACTTTTGATTACACAAAAANNCATTGGCTCCCACAAATCAGTTCAACTTCCTGCCGCAATTGCGCTCGATCAAATGTTTTGTTTACAAACATGCGACTACGCTTAGTTCTACTTCCCGCCACAGTGAGTTCCCCGATAACACAAAAGTACCGAAAATTCTGGNTTTTGTGATTTTAGTGTCATTCTTCATTTACCTTTTTAAAGTGTAATAATTTTAAAATTATATTTTCAACTGGGAACATGGATCGGTGGTTAAAAACAGGAAGTTTGAAGCGTAAGCTTGAAACCAGTGAAAATACGCAAGATAATGAGGGAAATTCAGAACAACCTGAAATCATCGAGGGTTGTGACAGACATGGCGTTGTCCCTGAGGCTCCCCACAATGAACTTGACAGTAAAGAAGATGATAGCACTACCCCAACCACAACTAGTGAATCGGTAGTAAGCAGCAGCAGTCAATCTAAAAAGCGTAGGATGTACTTAGATGCTTATTTAAAATATGGGTTTTATTATTGTGGAGATGCAAATGAGCCTAAACCTTGGTGTCTCTTGTGCGAGAAAACCCTGAGCAATAACTGCATGAAACCATCACTCTTGCAGCGACATTTAAAAACCAATCATGCAAATTTTGAAGGAAAATCACCAGAATTTTTTGCAACTAAAAAGAGAGAAGTCTTGGCTAGGAGCAATACAATGAAAAGCACAATCAAACAAGCAAATAAAAAATTGCTTGAAGCTTCCTTCAAGGTCAGTTTCAGAATCGCCTTGGAAGGTGAAGCTCACGTAATAGGAGAAAATTTGGTGAAGCCCTGCGCTGTAGATATGGCCGAATCTGTTTTGGGTCAAAAAGAGGCAGCCAAGCTGAAAAAGGTGCCCTTATCGAATGACACCGTCAAACGACGCATTTTAATGTGCTCAAAAGACATACTTGAACAACTGGTTGAGAGACTGAGGTTAACCCGGTTCTTTACCTTACAGTTGGATGAAAGCACGGACGTTAATGATTTGGCCATTTTATTGGTCTTTGTTCGCTATATTTATAATGATGATGTCTGTGAAGACATGTTAATTTGCAAAGTGCTTGATGGTAAAATAACTGGTGAAGAAATTTTCAACAAGATATGTGAANNTTTTAGCGAGCATGGTATCGACTGGAAAAAATGTACGGACGTGTGCACAGATGGGGCCAAATCTATGACGGGCAAAACTGCGGGAGCGGTAGCCCGCATCAAGGCCATTGCGCACCCTGAATGCACCAGCAGCCACTGCATCATTCACCGAGAACACCTCGCCTCAAAGAGTTTGCCTCTTGATTTTCTCAGTGTGTTCAATGGGGTGGTAAAAATGGTAAATTTTGTAAAAAACAGTGGTTTGAATACTTATCTTTTTAGACAAATTTGTAATGAAATGGGAAGTGACTTTGAAAGCTTGCTCTACTACACAGATGTATGCTGGCTTAGCCAGGAGAAGGTGCTGGTCAGAGTTTTCGAACTCAGGGTTGAATTGTTATTTTTCTTCATGGAGAAAAAAAATATCACGACAAAGGGTAAAAACCTGGATAAGGTGAATGAATTCATTGTTCACCTTAATGATAAAGAGTGGCTCACAAAGTTGGCTTATTTAGCAGATATTTTTTCAAGGCTGAACACTCTCAATCAACAACTGCAAGGCAAAACTGTGAATGTTTTTACTGCACATGACAAGATCGCTGCAATGAAAATGAAGTTTGAGAGTTGGATGAAGAGAGTTGATCGTGGGGACTATGAGTCGTTTGAGACTCTTAGTTCATTTACATGTGATGAAAATTACAGCGTTAGTGGTAAAATAAAGAATAACATCATCAGTCATCTTTCTTCACTGAAAAAGTCCTTTGATGAGTATTTCCCTGAGACAGTAAAAGAGACTGACCAGTGGATCAGAGACCCTTTCAGTCCGCCATATGACACAAGCGACTTGACCTCTCAGCAAGAAGATACACTTATCGAAATTTCCACCAACAGTAGCCTGAAAACGTTGCACCGTACCACCTCTTTGGCAGCATTCTGGGCATCTCTCCTCAGTGATTACCCTGACATAGCTCGTAAAGCAGTGAAAAAACNGTTGCCATTTGTATCCACATATTTATGTGAGTCTGGGTTCTCGAAATATTGTGACACCAAGACAGAGAAGAGAAATTGCCTGGATGCTGAACCTGATATGCGGCGTCAGCTCTCTTCAATTCAGCCCAATTTTCCGAAATTGATAGACTCAATGCAACAGCATCTTGTCCATTAACCAATGAGACAGGTAGGAAATGTTTTCCTTGATGGTAAGTAATTTAAAACATTATTTTTTATATTAAAACAAACACGGATATATTATGGAGTAGAATGCAAAATTCGCATGAATTTTTAAGATAAAACGCGAGACTTCAAAGAAATTTCGCGCTTGTGGCAGGGCTGCTTCGGGCTATGCCCCCAGACCCCCCGGGGGGTACGCATTCACTCTCCTCTGCCGTTAGGGGTACTTCGGTGGAAAAGTTTGAGAAGCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie16 | REV | 1556 | 1569 | - | 17.04 | CATCATCATTATAA |
| Charlie16 | ERF::FOXO1 | 773 | 784 | + | 16.86 | AAAAACAGGAAG |
| Charlie16 | CHES-1-like | 596 | 605 | - | 16.77 | TGTAAACAAA |
| Charlie16 | DOF4.2 | 708 | 718 | - | 16.77 | AAAAAGGTAAA |
| Charlie16 | FKH1 | 596 | 608 | - | 16.61 | GTTTGTAAACAAA |
| Charlie16 | RVE4 | 2144 | 2152 | + | 16.53 | AGATATTTT |
| Charlie16 | INSM1 | 2970 | 2981 | - | 16.40 | GGTCTGGGGGCA |
| Charlie16 | RVE7 | 2144 | 2152 | - | 16.38 | AAAATATCT |
| Charlie16 | ESRRA | 1261 | 1269 | + | 16.33 | TCAAGGTCA |
| Charlie16 | ZNF418 | 1246 | 1260 | - | 16.32 | AGGAAGCTTCAAGCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
