Charlie16
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001313 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 3051 |
| Kimura value | 30.38 |
| Tau index | 1.0000 |
| Description | hAT-Charlie DNA transposon, Charlie16 subfamily |
| Comment | Autonomous Charlie hAT transposon. ORF ~759-2792. 16 bp TIRs. |
| Sequence |
CAGTGCTTCTCAAACTGGGGTACGCGTACCCCCGGGGGTATGCAGTGGCAGAGGGGCAGTACGAAGCCACAGGATAAACATGGCGCATCTTCCTGGAGCGTCAATTTTACTCGAAGATTTGGGGGAAANAAGTTTTGAATTTTTGCGCTCTTAAAAGGTTTTGTCACATGCATGCGCAAGCAAAATCAGCAGAATCCTACTTTTCCATGTCGGCCAATCTCGTGTTTTTTCGTGAAAGCCCAGAGAGCAGAAAATTTTTATGTGCAGTGAGTGATTGGAAAATTTGGTACTTTTGTGTTATCGGGGAACCCGGTGGTATTAGCGCTGCAGTCGCGTCAAAGTGAACAGAGCGCGCANCGGCANTAAAACGGATTATGCCANNTCCNTGNCCNCAGTGGGGGCTGNTNATGCCANNGCAGAAGAGCNGGAGCGTGTGATTTCTCGGCAAGTCCGNGGAGGCCTACACAGCTAGCTTTTTGAAAAACGAGTTTGTCACCTTATAAATGCGGTTNTTTTTNACTTTTGATTACACAAAAANNCATTGGCTCCCACAAATCAGTTCAACTTCCTGCCGCAATTGCGCTCGATCAAATGTTTTGTTTACAAACATGCGACTACGCTTAGTTCTACTTCCCGCCACAGTGAGTTCCCCGATAACACAAAAGTACCGAAAATTCTGGNTTTTGTGATTTTAGTGTCATTCTTCATTTACCTTTTTAAAGTGTAATAATTTTAAAATTATATTTTCAACTGGGAACATGGATCGGTGGTTAAAAACAGGAAGTTTGAAGCGTAAGCTTGAAACCAGTGAAAATACGCAAGATAATGAGGGAAATTCAGAACAACCTGAAATCATCGAGGGTTGTGACAGACATGGCGTTGTCCCTGAGGCTCCCCACAATGAACTTGACAGTAAAGAAGATGATAGCACTACCCCAACCACAACTAGTGAATCGGTAGTAAGCAGCAGCAGTCAATCTAAAAAGCGTAGGATGTACTTAGATGCTTATTTAAAATATGGGTTTTATTATTGTGGAGATGCAAATGAGCCTAAACCTTGGTGTCTCTTGTGCGAGAAAACCCTGAGCAATAACTGCATGAAACCATCACTCTTGCAGCGACATTTAAAAACCAATCATGCAAATTTTGAAGGAAAATCACCAGAATTTTTTGCAACTAAAAAGAGAGAAGTCTTGGCTAGGAGCAATACAATGAAAAGCACAATCAAACAAGCAAATAAAAAATTGCTTGAAGCTTCCTTCAAGGTCAGTTTCAGAATCGCCTTGGAAGGTGAAGCTCACGTAATAGGAGAAAATTTGGTGAAGCCCTGCGCTGTAGATATGGCCGAATCTGTTTTGGGTCAAAAAGAGGCAGCCAAGCTGAAAAAGGTGCCCTTATCGAATGACACCGTCAAACGACGCATTTTAATGTGCTCAAAAGACATACTTGAACAACTGGTTGAGAGACTGAGGTTAACCCGGTTCTTTACCTTACAGTTGGATGAAAGCACGGACGTTAATGATTTGGCCATTTTATTGGTCTTTGTTCGCTATATTTATAATGATGATGTCTGTGAAGACATGTTAATTTGCAAAGTGCTTGATGGTAAAATAACTGGTGAAGAAATTTTCAACAAGATATGTGAANNTTTTAGCGAGCATGGTATCGACTGGAAAAAATGTACGGACGTGTGCACAGATGGGGCCAAATCTATGACGGGCAAAACTGCGGGAGCGGTAGCCCGCATCAAGGCCATTGCGCACCCTGAATGCACCAGCAGCCACTGCATCATTCACCGAGAACACCTCGCCTCAAAGAGTTTGCCTCTTGATTTTCTCAGTGTGTTCAATGGGGTGGTAAAAATGGTAAATTTTGTAAAAAACAGTGGTTTGAATACTTATCTTTTTAGACAAATTTGTAATGAAATGGGAAGTGACTTTGAAAGCTTGCTCTACTACACAGATGTATGCTGGCTTAGCCAGGAGAAGGTGCTGGTCAGAGTTTTCGAACTCAGGGTTGAATTGTTATTTTTCTTCATGGAGAAAAAAAATATCACGACAAAGGGTAAAAACCTGGATAAGGTGAATGAATTCATTGTTCACCTTAATGATAAAGAGTGGCTCACAAAGTTGGCTTATTTAGCAGATATTTTTTCAAGGCTGAACACTCTCAATCAACAACTGCAAGGCAAAACTGTGAATGTTTTTACTGCACATGACAAGATCGCTGCAATGAAAATGAAGTTTGAGAGTTGGATGAAGAGAGTTGATCGTGGGGACTATGAGTCGTTTGAGACTCTTAGTTCATTTACATGTGATGAAAATTACAGCGTTAGTGGTAAAATAAAGAATAACATCATCAGTCATCTTTCTTCACTGAAAAAGTCCTTTGATGAGTATTTCCCTGAGACAGTAAAAGAGACTGACCAGTGGATCAGAGACCCTTTCAGTCCGCCATATGACACAAGCGACTTGACCTCTCAGCAAGAAGATACACTTATCGAAATTTCCACCAACAGTAGCCTGAAAACGTTGCACCGTACCACCTCTTTGGCAGCATTCTGGGCATCTCTCCTCAGTGATTACCCTGACATAGCTCGTAAAGCAGTGAAAAAACNGTTGCCATTTGTATCCACATATTTATGTGAGTCTGGGTTCTCGAAATATTGTGACACCAAGACAGAGAAGAGAAATTGCCTGGATGCTGAACCTGATATGCGGCGTCAGCTCTCTTCAATTCAGCCCAATTTTCCGAAATTGATAGACTCAATGCAACAGCATCTTGTCCATTAACCAATGAGACAGGTAGGAAATGTTTTCCTTGATGGTAAGTAATTTAAAACATTATTTTTTATATTAAAACAAACACGGATATATTATGGAGTAGAATGCAAAATTCGCATGAATTTTTAAGATAAAACGCGAGACTTCAAAGAAATTTCGCGCTTGTGGCAGGGCTGCTTCGGGCTATGCCCCCAGACCCCCCGGGGGGTACGCATTCACTCTCCTCTGCCGTTAGGGGTACTTCGGTGGAAAAGTTTGAGAAGCACTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Charlie16 | GLIS1 | 2268 | 2282 | - | -8.47 | ATAGTCCCCACGATC |
| Charlie16 | Sox21b | 2319 | 2333 | + | -9.90 | GAAAATTACAGCGTT |
| Charlie16 | BCL6B | 643 | 659 | - | -11.26 | TGTTATCGGGGAACTCA |
| Charlie16 | BCL6B | 950 | 966 | - | -15.07 | TGCTTACTACCGATTCA |
| Charlie16 | ZSCAN16 | 1002 | 1019 | - | -22.96 | ATATTTTAAATAAGCATC |
| Charlie16 | BPC5 | 811 | 840 | + | -49.13 | AAAATACGCAAGATAATGAGGGAAATTCAG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
