Chap1_Mam
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000080 |
|---|---|
| TE superfamily | Charlie |
| TE class | DNA |
| Species | Eutheria |
| Length | 342 |
| Kimura value | 29.70 |
| Tau index | 0.9332 |
| Description | hAT-Charlie DNA transposon, Chap1_Mam subfamily |
| Comment | Chap1_Mam TSD is "NNCTAGNN". |
| Sequence |
CAGCGGTTCTCAACCGCGGTGTCACGACACACTGGTGTGTCGCGATCAGTTGTGAGGTGTGTCGCAAGTAATTTGTTACTAATAATAGTTAAAGTACCGAAGTTTGCGAATGATTTACTTTTTTTAAATAAATTAGAGCGGATTCAAGGTTATCCCTATAATAACGTCACTCTCACTCACTTGCATTCCGATATGCTTTCTTGAGTGGGAGAGAAAGGGGTGGAGTTACAGCTAGCGCGCCGGGAATTGCGCGTAACCCCGGGTATGCCCATGGGAGTGTGTCGCGCATGTGAACGTCATCCGTCACGTGTGTCGCGGCGGAAAAAAGGTTGAGAACCGCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Chap1_Mam | Creb3l2 | 303 | 311 | + | 13.36 | GTCACGTGT |
| Chap1_Mam | PROP1 | 125 | 135 | + | 13.31 | TAAATAAATTA |
| Chap1_Mam | EBF3 | 268 | 276 | + | 13.28 | CCCATGGGA |
| Chap1_Mam | PRDM1 | 211 | 217 | - | 13.28 | CTTTCTC |
| Chap1_Mam | Mitf | 304 | 310 | + | 13.21 | TCACGTG |
| Chap1_Mam | Kr | 214 | 222 | - | 13.16 | CACCCCTTT |
| Chap1_Mam | DOF4.2 | 323 | 333 | + | 13.12 | AAAAAGGTTGA |
| Chap1_Mam | TGA1 | 294 | 301 | - | 13.07 | GATGACGT |
| Chap1_Mam | BZR2 | 302 | 311 | - | 13.06 | ACACGTGACG |
| Chap1_Mam | BAM8 | 304 | 312 | - | 13.04 | CACACGTGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
